CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92684
KRG99108	nucleus
KRH06094	nucleus
KRH34092
KRH45889	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	KRH06094	AT1G58100.1	23760157
AT1G58100.1	KRH06094	AT1G58100.1	23760157
AT1G58100.1	KRG99108	AT1G69690.1	23760157
AT1G58100.1	KRH45889	AT1G69690.1	23760157
AT1G58100.1	KRG92684	AT5G60960.1	21297037
AT1G58100.1	KRH34092	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26343	Soybean	nucleus, plastid	88.09	73.27
PGSC0003DMT400064164	Potato	nucleus	65.1	44.01
Solyc01g103780.2.1	Tomato	nucleus	49.31	40.0
CDY39914	Canola	nucleus, plastid	42.66	39.09
CDY71135	Canola	nucleus	42.11	38.78
Bra027886.1-P	Field mustard	nucleus, plastid	42.11	38.58
AT1G58100.1	Thale cress	nucleus	42.66	38.4
HORVU5Hr1G035980.1	Barley	cytosol	40.44	38.32
Os12t0173300-00	Rice	nucleus	44.04	38.04
Zm00001d023565_P001	Maize	nucleus	42.66	38.02
Zm00001d041866_P001	Maize	nucleus	43.21	37.5
KRG89108	Soybean	nucleus, plastid	23.55	36.64
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	39.06	36.43
Os11t0175700-00	Rice	nucleus, plastid	40.72	36.21
HORVU4Hr1G019380.1	Barley	nucleus, plastid	38.5	36.2
KRH36141	Soybean	nucleus	24.65	36.18
TraesCS4D01G090500.1	Wheat	nucleus, plastid	38.5	36.1
TraesCS4B01G093700.1	Wheat	nucleus, plastid	37.95	35.96
KRH30615	Soybean	cytosol	15.51	35.9
TraesCS4A01G222700.1	Wheat	nucleus, plastid	38.23	35.84
KRH45889	Soybean	nucleus	28.25	35.66
KRH40904	Soybean	nucleus	23.55	35.56
KRH40902	Soybean	nucleus	23.55	35.42
TraesCS5A01G121800.1	Wheat	nucleus	40.72	35.08
KRG90619	Soybean	nucleus	23.27	34.71
KRG99108	Soybean	nucleus	26.04	34.43
TraesCS5B01G117100.1	Wheat	nucleus	39.61	34.29
KRH32533	Soybean	plastid	18.01	34.21
KRH19921	Soybean	plastid	17.45	34.05
KRH49755	Soybean	nucleus	18.56	33.84
Zm00001d004791_P001	Maize	mitochondrion, nucleus	18.56	32.68
GSMUA_Achr6P17840_001	Banana	cytosol	33.52	31.19
KRG94577	Soybean	nucleus	27.7	30.3
KRH03466	Soybean	nucleus	34.35	30.02
KRH74835	Soybean	nucleus	31.58	29.61
KRH56919	Soybean	nucleus	34.07	29.57
KRH70699	Soybean	nucleus	34.63	29.48
KRH63357	Soybean	nucleus	32.13	29.15
KRH06910	Soybean	nucleus	27.42	28.7
KRH54542	Soybean	nucleus	32.13	28.43
KRH48289	Soybean	nucleus	25.76	27.76
KRH65181	Soybean	nucleus	24.93	26.79
KRH35393	Soybean	nucleus	22.99	26.69
KRG91429	Soybean	nucleus	24.1	26.69
KRH57263	Soybean	nucleus	24.38	25.43
GSMUA_Achr10P...	Banana	nucleus	27.98	25.0
KRH03994	Soybean	nucleus	22.71	24.12

Protein Annotations

EntrezGene:100812983	MapMan:15.5.19	EMBL:ACUP02009815	EnsemblPlantsGene:GLYMA_16G004300	GO:GO:0000978	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	UniProt:I1MJW9	InterPro:IPR017887	EnsemblPlants:KRH06094
ProteinID:KRH06094	ProteinID:KRH06094.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000233E7A8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:-:237659..239566

Molecular Weight (calculated)

38252.5 Da

IEP (calculated)

7.319

GRAVY (calculated)

-0.580

Length

361 amino acids

Sequence
(BLAST)

001: MKKLTGGASS PASSSSLAIP TANPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSSLNVSLR
101: SSGSTLSAPP SKSAPHTFHG ALALAHHPYE EAFQHPALLG FHPHAHQPQQ LLSADHIPES LPSGAGDSGD NYLRKRYRED LFKDDNINNN NTQSQNESGD
201: GDGSSPKLPK QQSEAGSGLL RPSNLLPATA MWAVAPSPAS GPPGSTIWML PVTAGASSSA SSETQMWPFP QSVSGFMPRF NLPVPGALEF QGARAGSLQL
301: GSMSMPQQQH LGLAMSDSNL GMLAALNAYT RASLNVNSDH HQHQHQSQPS ESGEDDPNSS Q

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.