Factsheet for Zm00001d023565_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004791_P001	nucleus
Zm00001d006822_P001
Zm00001d023565_P001	nucleus
Zm00001d041866_P001	nucleus
Zm00001d053020_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	Zm00001d004791_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d023565_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d041866_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d053020_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d004791_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d023565_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d041866_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d053020_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d006822_P001	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041866_P001	Maize	nucleus	83.46	81.25
Os12t0173300-00	Rice	nucleus	71.36	69.14
HORVU5Hr1G035980.1	Barley	cytosol	62.47	66.4
TraesCS5A01G121800.1	Wheat	nucleus	67.65	65.39
TraesCS5B01G117100.1	Wheat	nucleus	66.17	64.27
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	47.16	49.35
KRH06094	Soybean	plastid	38.02	42.66
CDY71135	Canola	nucleus	39.01	40.31
Zm00001d018530_P001	Maize	plastid	20.49	40.1
AT1G58100.1	Thale cress	nucleus	39.26	39.65
Zm00001d025896_P001	Maize	plastid	20.25	39.61
CDY39914	Canola	nucleus, plastid	38.52	39.59
Bra027886.1-P	Field mustard	nucleus, plastid	38.27	39.34
Zm00001d017350_P001	Maize	plastid	19.51	35.91
Zm00001d051216_P001	Maize	plastid	19.01	35.32
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.53	34.63
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	38.27	33.7
Zm00001d025033_P001	Maize	plastid	14.07	32.39
Zm00001d044836_P001	Maize	nucleus	28.15	31.93
PGSC0003DMT400064164	Potato	nucleus	40.0	30.34
Solyc01g103780.2.1	Tomato	nucleus	32.35	29.44
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	27.41	29.29
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	27.16	28.28
Zm00001d011985_P001	Maize	nucleus	21.98	28.25
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	22.47	28.09
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	27.65	28.0
GSMUA_Achr6P17840_001	Banana	cytosol	26.17	27.32
GSMUA_Achr10P...	Banana	nucleus	26.42	26.49
Zm00001d031725_P001	Maize	nucleus	20.99	24.29
Zm00001d006165_P001	Maize	nucleus	18.52	22.73
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	15.06	22.1
Zm00001d038444_P001	Maize	nucleus	15.31	20.88
Zm00001d044344_P001	Maize	nucleus	15.06	20.54

Protein Annotations

EntrezGene:100384575	MapMan:15.5.19	ProteinID:AQK39574.1	EMBL:BT083691	UniProt:C4IYP4	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EMBL:KJ726951	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF36	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001A4BC58	EnsemblPlantsGene:Zm00001d023565
EnsemblPlants:Zm00001d023565_P001	EnsemblPlants:Zm00001d023565_T001	SEG:seg	:	:	:

Description

TCP-transcription factor 12Transcription factor TCP8

Coordinates

chr10:-:10313565..10314782

Molecular Weight (calculated)

41093.1 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.630

Length

405 amino acids

Sequence
(BLAST)

001: MDHGGGGGGG GAPSSSNSAG GAAAGGGATA GGASGGRGSE HHPFYYAGPA ASNSGVPQAQ QQPSPFAGAL AIAPVPEQPQ PSSADKKALV PAAPAAAGPV
101: VAKRPSKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAILAA TGTGTIPANY SSLNISIRSG AAAPAARAAP FPALALHPHH
201: HHQAAPAHDM SAMMAGYHHH LLPPQPQPQE DPSAGDAYMR KRYREDLFKE DDERQDPSAP KAREQQAATP PPQPQPSATM WAAAAPSGGF WMLPVSASSA
301: AAARPAEQPM WSFSGGGGTG TVQAPLQFMS RASYPGGAAG GGGGAMSDTN LGMLAALNAY NRGGSEEQQQ TEGEQQHGGD GGVNDDGDED GDDSAEENNG
401: NNSSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.