Factsheet for Zm00001d031725_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G830210_P01
Zm00001d005108_P003
Zm00001d006165_P001
Zm00001d008932_P001
Zm00001d009215_P001
Zm00001d009879_P002
Zm00001d010336_P001
Zm00001d010811_P002
Zm00001d014925_P001
Zm00001d018530_P001
Zm00001d022141_P007
Zm00001d022225_P001
Zm00001d029339_P001
Zm00001d031725_P001
Zm00001d038745_P002
Zm00001d039365_P001
Zm00001d039637_P001
Zm00001d045251_P001
Zm00001d045606_P002
Zm00001d048901_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51910.1	Zm00001d039637_P001	AT2G03500.1	21798944
AT5G51910.1	Zm00001d008932_P001	AT2G30050.1	21798944
AT5G51910.1	Zm00001d039365_P001	AT2G30050.1	21798944
AT5G51910.1	Zm00001d009215_P001	AT3G16980.1	21798944
AT5G51910.1	Zm00001d022141_P007	AT3G16980.1	21798944
AT5G51910.1	Zm00001d009879_P002	AT3G20420.1	21798944
AT5G51910.1	Zm00001d005108_P003	AT3G29160.1	21798944
AT5G51910.1	Zm00001d010811_P002	AT3G29160.1	21798944
AT5G51910.1	Zm00001d038745_P002	AT3G29160.1	21798944
AT5G51910.1	Zm00001d022225_P001	AT3G47640.1	21798944
AT5G51910.1	Zm00001d029339_P001	AT3G47640.1	21798944
AT5G51910.1	Zm00001d048901_P002	AT3G47640.1	21798944
AT5G51910.1	Zm00001d010336_P001	AT4G04800.1	21798944
AT5G51910.1	GRMZM5G830210_P01	AT4G11175.1	21798944
AT5G51910.1	Zm00001d045251_P001	AT4G16760.1	21798944
AT5G51910.1	Zm00001d045606_P002	AT4G16760.1	21798944
AT5G51910.1	Zm00001d014925_P001	AT5G07840.1	21798944
AT5G51910.1	Zm00001d018530_P001	AT5G08330.1	21798944
AT5G51910.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT5G51910.1	Zm00001d031725_P001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80770	Sorghum	nucleus	92.0	89.69
Os08t0544800-01	Rice	nucleus	80.86	75.87
TraesCS4A01G355900.1	Wheat	nucleus	61.14	72.3
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	71.43	71.63
TraesCS5D01G516300.1	Wheat	nucleus	69.71	70.93
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	70.86	66.13
GSMUA_Achr3P12320_001	Banana	cytosol	22.29	38.61
Zm00001d018530_P001	Maize	plastid	20.57	34.78
AT5G51910.1	Thale cress	nucleus	28.86	34.47
VIT_16s0022g02480.t01	Wine grape	nucleus	16.57	34.32
VIT_15s0048g01150.t01	Wine grape	nucleus	32.86	33.92
CDY27099	Canola	nucleus	26.86	33.69
CDX95656	Canola	nucleus	27.43	32.76
KRH35393	Soybean	nucleus	28.86	32.48
Zm00001d025033_P001	Maize	plastid	16.29	32.39
Zm00001d025896_P001	Maize	plastid	19.14	32.37
CDX91612	Canola	nucleus	26.57	32.29
KRG91429	Soybean	nucleus	30.0	32.21
Bra022568.1-P	Field mustard	cytosol	26.86	31.65
KRH48289	Soybean	nucleus	30.29	31.64
CDY53888	Canola	nucleus	28.0	31.51
Bra000395.1-P	Field mustard	nucleus	28.0	31.51
PGSC0003DMT400094424	Potato	cytosol	22.0	31.43
KRH65181	Soybean	nucleus	30.0	31.25
Bra004929.1-P	Field mustard	nucleus	28.86	31.17
CDX74756	Canola	nucleus	28.86	31.08
CDY18910	Canola	nucleus	28.57	30.77
Solyc03g006800.1.1	Tomato	nucleus	28.0	30.06
KRH57263	Soybean	nucleus	29.71	30.06
KRH03994	Soybean	nucleus	28.86	29.71
Zm00001d006165_P001	Maize	nucleus	27.71	29.39
PGSC0003DMT400088049	Potato	cytosol	22.57	29.26
Zm00001d017350_P001	Maize	plastid	18.29	29.09
Zm00001d051216_P001	Maize	plastid	18.0	28.9
AT2G45680.1	Thale cress	cytosol	28.86	28.37
PGSC0003DMT400062327	Potato	nucleus	28.57	27.32
Solyc08g080150.1.1	Tomato	nucleus	28.0	26.49
VIT_02s0025g04590.t01	Wine grape	nucleus	30.86	26.28
PGSC0003DMT400058534	Potato	nucleus	28.0	26.2
Zm00001d011985_P001	Maize	nucleus	21.14	23.49
Zm00001d004791_P001	Maize	mitochondrion, nucleus	13.71	23.41
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	25.71	22.5
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	24.86	22.48
Zm00001d044836_P001	Maize	nucleus	22.86	22.41
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	20.57	22.22
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	24.57	22.11
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	23.14	21.37
Zm00001d023565_P001	Maize	nucleus	24.29	20.99
Zm00001d041866_P001	Maize	nucleus	24.57	20.67
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	14.29	18.12
Zm00001d038444_P001	Maize	nucleus	14.29	16.84
Zm00001d044344_P001	Maize	nucleus	14.0	16.5

Protein Annotations

MapMan:15.5.19	UniProt:A0A1D6KL25	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
ProteinID:ONM03592.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF19	InterPro:TF_TCP_subgr
TMHMM:TMhelix	InterPro:Transcription_factor_TCP	UniParc:UPI000842F281	EnsemblPlantsGene:Zm00001d031725	EnsemblPlants:Zm00001d031725_P001	EnsemblPlants:Zm00001d031725_T001
SEG:seg	:	:	:	:	:

Description

TCP-transcription factor 21Transcription factor TCP9

Coordinates

chr1:-:199651976..199653028

Molecular Weight (calculated)

36118.3 Da

IEP (calculated)

5.577

GRAVY (calculated)

-0.325

Length

350 amino acids

Sequence
(BLAST)

001: MEAQAQDNRA EDGDGARQHV AGGVAATGMA MGAISMHGFM VPKPEPVEFF GGMAVVRSKP PPRNRDRHTK VEGRGRRIRM PAACAARIFQ LTRELGHKSD
101: GETIRWLLQQ SEPAIIAATG TGTVPAIATT VDGVLRIPTQ SSSSSSPSSL TTVVDGDEAS AKRRRKLQPT RAAAGASPLA TAAPAAYYPV LADPLLQGTG
201: GAAISVPSGL APIAASGAPQ GLVPVFAVPA AGSPGGGNRM IPQATAVWMV PQPGAAAAQP TQFWAIQPAP QLINLGGAQA AVFPAAVNVA DFQGQQPISS
301: LSHNSNSEHL HLGSGSHEQQ RGGRSDVNHP EEEEDDDDDD EPVSDSSPEE

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.