Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53888 | Canola | nucleus | 97.43 | 97.43 |
| CDX95656 | Canola | nucleus | 90.03 | 95.56 |
| Bra004929.1-P | Field mustard | nucleus | 81.03 | 77.78 |
| AT2G45680.1 | Thale cress | cytosol | 78.46 | 68.54 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 54.02 | 49.56 |
| KRH65181 | Soybean | nucleus | 51.77 | 47.92 |
| KRH48289 | Soybean | nucleus | 51.45 | 47.76 |
| Bra022568.1-P | Field mustard | cytosol | 40.19 | 42.09 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 23.15 | 35.64 |
| Bra026506.1-P | Field mustard | cytosol, mitochondrion, nucleus | 24.44 | 35.19 |
| GSMUA_Achr11P... | Banana | nucleus | 24.76 | 34.07 |
| Bra009338.1-P | Field mustard | nucleus | 25.4 | 33.47 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 23.15 | 32.73 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 33.12 | 32.39 |
| Bra028662.1-P | Field mustard | nucleus | 23.79 | 32.31 |
| Bra005984.1-P | Field mustard | nucleus | 24.12 | 32.05 |
| PGSC0003DMT400088049 | Potato | cytosol | 27.65 | 31.85 |
| Bra029366.1-P | Field mustard | cytosol | 18.01 | 31.82 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 18.97 | 31.22 |
| PGSC0003DMT400094424 | Potato | cytosol | 24.12 | 30.61 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 32.8 | 29.74 |
| Bra009667.1-P | Field mustard | nucleus | 23.47 | 29.2 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 27.65 | 29.05 |
| Bra025528.1-P | Field mustard | nucleus | 20.26 | 28.12 |
| Zm00001d031725_P001 | Maize | nucleus | 31.51 | 28.0 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 30.87 | 27.91 |
| OQU80770 | Sorghum | nucleus | 31.83 | 27.58 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 30.87 | 27.51 |
| Os08t0544800-01 | Rice | nucleus | 32.48 | 27.08 |
| Bra039096.1-P | Field mustard | nucleus | 23.79 | 26.62 |
| Bra004407.1-P | Field mustard | nucleus, plastid | 27.01 | 26.17 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 30.87 | 25.6 |
| Bra025244.1-P | Field mustard | nucleus | 24.12 | 24.43 |
| Bra003986.1-P | Field mustard | cytosol | 18.65 | 23.67 |
| Bra007875.1-P | Field mustard | cytosol | 18.65 | 23.58 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 20.58 | 23.44 |
| Bra016090.1-P | Field mustard | nucleus | 25.4 | 22.19 |
| Zm00001d006165_P001 | Maize | nucleus | 22.83 | 21.52 |
| EER99208 | Sorghum | nucleus | 22.51 | 21.47 |
| Bra027886.1-P | Field mustard | nucleus, plastid | 26.37 | 20.81 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 22.19 | 20.66 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 22.51 | 20.65 |
| Bra008001.1-P | Field mustard | nucleus, plastid | 24.76 | 20.59 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 22.19 | 20.41 |
| Os09t0521300-00 | Rice | nucleus | 23.47 | 19.16 |
| Bra018126.1-P | Field mustard | nucleus | 27.97 | 18.67 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlantsGene:Bra000395 | EnsemblPlants:Bra000395.1 | EnsemblPlants:Bra000395.1-P | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:M4C867 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000253FE49 | SEG:seg | : |
Description
AT2G45680 (E=9e-099) | TCP family transcription factor, putative
Coordinates
chrA03:-:10917732..10918667
Molecular Weight (calculated)
33176.7 Da
IEP (calculated)
10.286
GRAVY (calculated)
-0.237
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIKKHEAE RLRAVDLNII ETSKPFEVAN TVSLELKAEP SLEVPSISMS LAPPSSSIGP PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH
101: KSDGETIRWL LENAEPAIIA ATGTGTVPAI AMSVNGTLKI PTTTNADADV AENPAKKRRK RPSNSEYIDI NEPVSVSVSS GLAPASTAAQ QTLPQGMIPM
201: WAFPSNAVVP TVGAFFLVQN PSNQPQILAY PAAAAALPAT YVAAVQQASS MARPPPTPQV VPNFTGSVMA PSSSSSIATK NMLRDFSLES YNKKELHQFM
301: TTTAAPRSSN H
101: KSDGETIRWL LENAEPAIIA ATGTGTVPAI AMSVNGTLKI PTTTNADADV AENPAKKRRK RPSNSEYIDI NEPVSVSVSS GLAPASTAAQ QTLPQGMIPM
201: WAFPSNAVVP TVGAFFLVQN PSNQPQILAY PAAAAALPAT YVAAVQQASS MARPPPTPQV VPNFTGSVMA PSSSSSIATK NMLRDFSLES YNKKELHQFM
301: TTTAAPRSSN H
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.