Factsheet for Bra003986.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000626.1-P
Bra004644.1-P
Bra004645.1-P
Bra010501.1-P
Bra010881.1-P
Bra011662.1-P
Bra012471.1-P
Bra013635.1-P
Bra013844.1-P
Bra017747.1-P
Bra018343.1-P
Bra018774.1-P
Bra018956.1-P
Bra020704.1-P
Bra020834.1-P
Bra021603.1-P
Bra021765.1-P
Bra022523.1-P
Bra022774.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P
Bra030094.1-P
Bra030396.1-P
Bra032056.1-P
Bra032421.1-P
Bra032898.1-P
Bra036176.1-P
Bra037488.1-P
Bra037489.1-P
Bra040595.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69690.1	Bra032421.1-P	AT1G06450.1	21798944
AT1G69690.1	Bra012471.1-P	AT1G25550.1	21798944
AT1G69690.1	Bra010881.1-P	AT1G28360.1	21798944
AT1G69690.1	Bra030094.1-P	AT1G28360.1	21798944
AT1G69690.1	Bra032898.1-P	AT1G28360.1	21798944
AT1G69690.1	Bra018774.1-P	AT1G49030.1	21798944
AT1G69690.1	Bra018956.1-P	AT1G52240.1	21798944
AT1G69690.1	Bra030396.1-P	AT1G52240.1	21798944
AT1G69690.1	Bra032056.1-P	AT2G24860.1	21798944
AT1G69690.1	Bra018343.1-P	AT2G30050.1	21798944
AT1G69690.1	Bra021603.1-P	AT2G30050.1	21798944
AT1G69690.1	Bra022774.1-P	AT2G30050.1	21798944
AT1G69690.1	Bra021765.1-P	AT2G31985.1	21798944
AT1G69690.1	Bra004644.1-P	AT2G41730.1	21798944
AT1G69690.1	Bra004645.1-P	AT2G41730.1	21798944
AT1G69690.1	Bra040595.1-P	AT4G14980.1	21798944
AT1G69690.1	Bra013635.1-P	AT4G22720.1	21798944
AT1G69690.1	Bra020834.1-P	AT4G22720.1	21798944
AT1G69690.1	Bra013844.1-P	AT4G24900.1	21798944
AT1G69690.1	Bra010501.1-P	AT4G36110.1	21798944
AT1G69690.1	Bra011662.1-P	AT4G36110.1	21798944
AT1G69690.1	Bra017747.1-P	AT4G36110.1	21798944
AT1G69690.1	Bra025431.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra028174.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra028181.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra028406.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra020704.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra036176.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra037488.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra037489.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra000626.1-P	AT5G50600.1	21798944
AT1G69690.1	Bra022523.1-P	AT5G50600.1	21798944
AT1G69690.1	Bra000626.1-P	AT5G50700.1	21798944
AT1G69690.1	Bra022523.1-P	AT5G50700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007875.1-P	Field mustard	cytosol	91.43	91.06
AT1G69690.1	Thale cress	nucleus, plastid	93.06	70.15
Bra004407.1-P	Field mustard	nucleus, plastid	90.61	69.16
VIT_01s0026g02200.t01	Wine grape	nucleus	50.61	35.13
Bra029366.1-P	Field mustard	cytosol	24.9	34.66
KRH45889	Soybean	nucleus	37.55	32.17
KRG99108	Soybean	nucleus	33.88	30.4
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	24.49	27.78
Bra009338.1-P	Field mustard	nucleus	25.31	26.27
Bra028662.1-P	Field mustard	nucleus	24.49	26.2
PGSC0003DMT400008728	Potato	nucleus	38.78	25.61
Bra005984.1-P	Field mustard	nucleus	24.08	25.21
Bra009667.1-P	Field mustard	nucleus	25.71	25.2
Solyc05g007420.1.1	Tomato	nucleus	39.18	25.07
Bra025528.1-P	Field mustard	nucleus	22.04	24.11
Bra018126.1-P	Field mustard	nucleus	44.9	23.61
Bra016090.1-P	Field mustard	nucleus	31.02	21.35
Bra039096.1-P	Field mustard	nucleus	24.08	21.22
Bra027886.1-P	Field mustard	nucleus, plastid	33.47	20.81
Bra025244.1-P	Field mustard	nucleus	25.71	20.52
Bra022568.1-P	Field mustard	cytosol	23.67	19.53
Bra008001.1-P	Field mustard	nucleus, plastid	29.8	19.52
Bra000395.1-P	Field mustard	nucleus	23.67	18.65
Bra004929.1-P	Field mustard	nucleus	23.27	17.59

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra003986	EnsemblPlants:Bra003986.1	EnsemblPlants:Bra003986.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4CIF2	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF40	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000254196E	SEG:seg	:

Description

AT1G69690 (E=1e-088) | TCP family transcription factor, putative

Coordinates

chrA07:-:16129701..16130438

Molecular Weight (calculated)

25641.3 Da

IEP (calculated)

6.834

GRAVY (calculated)

-0.505

Length

245 amino acids

Sequence
(BLAST)

001: MPAMCAALVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSR SSLSAAHLRT TPSSYYFHSP TMAHHHQVRP KNESHSSSSS
101: QLLDHSQMGN YLVQSTAGSL PTSQTPATAP FWSSGDNTQN LWAFNINPHH SADVYNTNGG GGGGGGGAGV HLMNFAAPIA LFSGQPLASG YGGGGGGGGG
201: EHNHYGVLAA LNAAYRPVQE TANQQNRDGD HHHSHQEDGS TSHHS

Best Arabidopsis Sequence Match ( AT1G69690.1 )
(BLAST)

001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS

Arabidopsis Description

TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.