Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra034407.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G25550.1 | Bra034407.1-P | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51129 | Canola | nucleus | 92.71 | 95.31 |
| AT1G25550.1 | Thale cress | nucleus | 68.09 | 65.12 |
| Bra038360.1-P | Field mustard | nucleus | 53.5 | 47.83 |
| Bra004330.1-P | Field mustard | nucleus | 50.46 | 46.24 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 47.42 | 43.82 |
| Bra016734.1-P | Field mustard | nucleus | 44.38 | 42.2 |
| Bra017349.1-P | Field mustard | nucleus | 43.47 | 39.94 |
| KRH70595 | Soybean | nucleus | 43.47 | 38.54 |
| Bra025161.1-P | Field mustard | nucleus | 43.77 | 38.1 |
| PGSC0003DMT400002162 | Potato | nucleus | 43.16 | 37.77 |
| Solyc05g009720.2.1 | Tomato | nucleus | 45.59 | 37.5 |
| KRH75476 | Soybean | nucleus | 43.16 | 37.47 |
| GSMUA_Achr10P... | Banana | nucleus | 35.26 | 37.42 |
| Bra019824.1-P | Field mustard | nucleus | 41.34 | 37.26 |
| KRG92028 | Soybean | nucleus | 42.55 | 36.75 |
| KRH34759 | Soybean | nucleus | 41.95 | 36.03 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 39.82 | 35.31 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 36.47 | 35.29 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 27.96 | 34.72 |
| GSMUA_Achr11P... | Banana | nucleus | 37.99 | 33.88 |
| Os02t0325600-01 | Rice | nucleus | 41.03 | 32.77 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 36.78 | 32.44 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 29.18 | 31.17 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 32.83 | 30.86 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 37.39 | 30.6 |
| Bra010581.1-P | Field mustard | nucleus | 27.36 | 28.85 |
| Bra017795.1-P | Field mustard | nucleus | 25.53 | 28.57 |
| Zm00001d023411_P001 | Maize | nucleus | 39.21 | 28.48 |
| EES15678 | Sorghum | nucleus | 39.82 | 28.36 |
| Zm00001d023402_P001 | Maize | nucleus | 38.6 | 27.67 |
| Bra011720.1-P | Field mustard | nucleus | 26.44 | 26.77 |
| TraesCS2A01G116100.2 | Wheat | plastid | 38.3 | 26.53 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.16 | 24.24 |
| Bra040662.1-P | Field mustard | nucleus | 24.01 | 24.23 |
| Bra018794.1-P | Field mustard | nucleus | 21.88 | 23.84 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 37.39 | 23.79 |
| Bra026548.1-P | Field mustard | nucleus | 28.57 | 22.27 |
| Bra025115.1-P | Field mustard | nucleus | 28.57 | 22.22 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EnsemblPlantsGene:Bra012471 | EnsemblPlants:Bra012471.1 | EnsemblPlants:Bra012471.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M4D7L1 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002540B01 | SEG:seg | : |
Description
AT1G25550 (E=4e-085) | myb family transcription factor
Coordinates
chrA07:+:7369150..7370778
Molecular Weight (calculated)
37487.5 Da
IEP (calculated)
8.816
GRAVY (calculated)
-0.935
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKGDNMDY TLKCVQKKKD YTLKKKRCEE YIEALVEEQK KIQVFKRDLP LSIESYRKEL SEFSRSEHIQ PEGSERTTSE CEGRDGCIAL CEEFVPIKSC
101: ERVKDDEAEN NIDKKKSEWL QLWNQSPDPQ PIEDQTTTVV AAVKENCDAF QKGKLAYSQP LKAITPTPTA SSSTAETGGN KKEMEQQKQL QMHRKQRRCW
201: SSELHRRFLH ALQKLGGSHV ATPKQIRDLM QVDGLTNDEV KSHLQKYRLH TRRPATPTLT NGCENPQQQQ LIVVEGIWVP SKDAVNNRVY APVAVQPPPR
301: SSPSEPRSIQ RCKPPTSSSS THPLHLPLS
101: ERVKDDEAEN NIDKKKSEWL QLWNQSPDPQ PIEDQTTTVV AAVKENCDAF QKGKLAYSQP LKAITPTPTA SSSTAETGGN KKEMEQQKQL QMHRKQRRCW
201: SSELHRRFLH ALQKLGGSHV ATPKQIRDLM QVDGLTNDEV KSHLQKYRLH TRRPATPTLT NGCENPQQQQ LIVVEGIWVP SKDAVNNRVY APVAVQPPPR
301: SSPSEPRSIQ RCKPPTSSSS THPLHLPLS
001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
Arabidopsis Description
HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.