Factsheet for VIT_01s0011g03110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0875g00010.t01
VIT_12s0028g01210.t01
VIT_16s0100g00530.t01
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT1G68670.1	VIT_12s0028g01210.t01	AT2G04630.1	21798944
AT1G68670.1	VIT_16s0100g00530.t01	AT2G04630.1	21798944
AT1G68670.1	VIT_00s0875g00010.t01	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002162	Potato	nucleus	66.01	62.5
Solyc05g009720.2.1	Tomato	nucleus	66.85	59.5
KRH75476	Soybean	nucleus	60.11	56.46
KRH70595	Soybean	nucleus	58.43	56.06
KRG92028	Soybean	nucleus	59.55	55.64
AT1G25550.1	Thale cress	nucleus	53.65	55.52
CDX81535	Canola	nucleus	52.53	54.52
KRH34759	Soybean	nucleus	58.43	54.31
CDY54503	Canola	nucleus	55.62	53.8
Bra038360.1-P	Field mustard	nucleus	55.62	53.8
AT1G68670.1	Thale cress	nucleus	53.09	53.39
GSMUA_Achr10P...	Banana	nucleus	46.35	53.23
CDX95998	Canola	nucleus	52.25	51.81
Bra004330.1-P	Field mustard	nucleus	51.97	51.53
GSMUA_Achr6P09870_001	Banana	nucleus	49.16	51.47
CDY38609	Canola	nucleus	51.97	51.25
CDY51129	Canola	nucleus	45.79	50.94
CDY19382	Canola	nucleus	48.6	50.88
CDY20522	Canola	nucleus	45.79	49.39
CDY50179	Canola	nucleus	47.47	48.84
AT1G13300.1	Thale cress	nucleus	47.19	48.84
CDX97993	Canola	nucleus	47.19	48.7
CDY21091	Canola	nucleus	47.19	48.55
Bra016734.1-P	Field mustard	nucleus	47.19	48.55
GSMUA_Achr8P18270_001	Banana	nucleus	50.28	48.25
GSMUA_Achr3P21090_001	Banana	nucleus	50.28	47.99
GSMUA_Achr11P...	Banana	nucleus	49.72	47.97
CDY13584	Canola	nucleus	47.75	47.62
CDX83554	Canola	nucleus	47.19	47.46
Bra012471.1-P	Field mustard	nucleus	43.82	47.42
CDY04180	Canola	nucleus	44.66	47.18
CDY39188	Canola	nucleus	45.79	46.84
Bra019824.1-P	Field mustard	nucleus	47.75	46.58
CDY16075	Canola	nucleus	45.51	46.42
AT3G25790.1	Thale cress	nucleus	46.35	46.22
Bra025161.1-P	Field mustard	nucleus	48.88	46.03
Bra017349.1-P	Field mustard	nucleus	45.79	45.53
Os02t0325600-01	Rice	nucleus	50.84	43.93
GSMUA_Achr1P23220_001	Banana	nucleus	31.46	42.26
TraesCS2D01G119100.1	Wheat	nucleus	46.91	41.54
TraesCS2B01G135600.1	Wheat	nucleus	39.89	40.57
EES15678	Sorghum	nucleus	49.44	38.1
Zm00001d023411_P001	Maize	nucleus	48.31	37.97
Zm00001d023402_P001	Maize	nucleus	48.88	37.91
GSMUA_Achr4P03680_001	Banana	nucleus	32.02	37.01
TraesCS2A01G116100.2	Wheat	plastid	46.63	34.95
HORVU2Hr1G020140.3	Barley	nucleus, plastid	48.03	33.08
VIT_03s0063g01060.t01	Wine grape	nucleus	34.83	30.92
VIT_11s0016g04600.t01	Wine grape	nucleus	39.04	30.22
VIT_07s0197g00060.t01	Wine grape	nucleus	32.3	29.79
GSMUA_Achr4P13650_001	Banana	plastid	13.2	28.48

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100257723	wikigene:100257723	MapMan:15.5.2.3	ProteinID:CBI27058	ProteinID:CBI27058.3
ncoils:Coil	UniProt:D7T987	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0045892	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100257723	wikigene:LOC100257723
EMBL:MG711317	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003
PANTHER:PTHR31003:SF4	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00015C7C63	ArrayExpress:VIT_01s0011g03110
EnsemblPlantsGene:VIT_01s0011g03110	EnsemblPlants:VIT_01s0011g03110.t01	unigene:Vvi.6641	RefSeq:XP_002281762	RefSeq:XP_002281762.2	RefSeq:XP_003631224
RefSeq:XP_003631224.1	SEG:seg	:	:	:	:

Description

MYB-like putative GARP-type transcription factor [Source:UniProtKB/TrEMBL;Acc:D7T987]

Coordinates

chr1:+:2781518..2783517

Molecular Weight (calculated)

39257.5 Da

IEP (calculated)

8.164

GRAVY (calculated)

-1.008

Length

356 amino acids

Sequence
(BLAST)

001: MQRCHDYIEA LEEERRKIQV FQRELPLCLE LVSQAIESCR QQMSGTTQEY FHGQSECSEQ TSSDGPVLEE FIPIKKTSDD EDEQQSHQPN DNKDKNNDKS
101: GKKSDWLRSV QLWNQTPDPP VKEDTPKKIP SMEVKKNGGA FHPFKRDKAV GTNPTSAPSA ATSSTAETAT GCSSGSRKEE KEGQSQRKAR RCWSPELHRR
201: FLHALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPNPA IQHNGNPQAP QFVVVGGIWV PPPEYTAVAA TTSSGEATGV TTANGIYAPV
301: ASVPPSHPQG STQRQQPMKP KKSQSEERGS HSEGGVQSNS PATSSSTHTT TTSPVF

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.