Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21091 | Canola | nucleus | 97.11 | 97.11 |
| AT1G13300.1 | Thale cress | nucleus | 86.42 | 86.92 |
| CDY16075 | Canola | nucleus | 85.26 | 84.53 |
| CDX97993 | Canola | nucleus | 81.79 | 82.03 |
| CDY19382 | Canola | nucleus | 80.35 | 81.76 |
| CDY13584 | Canola | nucleus | 62.14 | 60.22 |
| CDX83554 | Canola | nucleus | 60.12 | 58.76 |
| CDY04180 | Canola | nucleus | 56.94 | 58.46 |
| CDY39188 | Canola | nucleus | 58.67 | 58.33 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 48.84 | 47.47 |
| CDY51129 | Canola | nucleus | 43.35 | 46.88 |
| CDY20522 | Canola | nucleus | 44.51 | 46.67 |
| CDX81535 | Canola | nucleus | 45.66 | 46.06 |
| CDX95998 | Canola | nucleus | 44.8 | 43.18 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.82 | 43.09 |
| CDY54503 | Canola | nucleus | 45.66 | 42.93 |
| CDY38609 | Canola | nucleus | 44.51 | 42.66 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.69 | 41.25 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 29.19 | 38.11 |
| GSMUA_Achr11P... | Banana | nucleus | 39.31 | 36.86 |
| GSMUA_Achr10P... | Banana | nucleus | 32.95 | 36.77 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 39.31 | 36.66 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 35.55 | 36.18 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 37.28 | 34.58 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 37.28 | 32.09 |
| Os02t0325600-01 | Rice | nucleus | 38.15 | 32.04 |
| CDY40421 | Canola | nucleus | 14.74 | 31.29 |
| CDY59732 | Canola | nucleus | 23.12 | 31.25 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 27.17 | 30.52 |
| CDX69259 | Canola | nucleus | 27.17 | 29.19 |
| CDY44057 | Canola | nucleus | 26.88 | 28.97 |
| CDY72117 | Canola | nucleus | 15.32 | 28.96 |
| CDY42715 | Canola | nucleus | 24.57 | 28.91 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 29.19 | 28.86 |
| CDX75610 | Canola | nucleus | 26.88 | 28.62 |
| CDY51048 | Canola | nucleus | 24.57 | 28.24 |
| EES15678 | Sorghum | nucleus | 36.99 | 27.71 |
| Zm00001d023411_P001 | Maize | nucleus | 36.13 | 27.59 |
| Zm00001d023402_P001 | Maize | nucleus | 35.84 | 27.02 |
| TraesCS2A01G116100.2 | Wheat | plastid | 36.71 | 26.74 |
| CDY70722 | Canola | nucleus | 23.41 | 26.38 |
| CDY51214 | Canola | nucleus | 31.21 | 25.53 |
| CDY02988 | Canola | nucleus | 31.21 | 25.53 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.14 | 25.45 |
| CDY71327 | Canola | nucleus | 24.57 | 25.45 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 37.28 | 24.95 |
| CDY71874 | Canola | nucleus | 25.72 | 24.65 |
| CDX69206 | Canola | nucleus | 10.98 | 24.36 |
| CDY22459 | Canola | nucleus | 26.3 | 22.36 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.69 | 18.32 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078ILG6 | UniProt:A0A078ILG6 | EnsemblPlants:CDY50179 | ProteinID:CDY50179 |
| ProteinID:CDY50179.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00096100001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF291B |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g15800DBnaC08g15800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILG6]
Coordinates
chrLK032886:-:88516..90187
Molecular Weight (calculated)
39237.1 Da
IEP (calculated)
7.128
GRAVY (calculated)
-1.012
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKKLSNMDY KQKQERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPGTA TENMYGQSEC SEQTTGECRP VLEQFLTIKD SSTSNEEEEL
101: DDEHGNHDPD NDSEDKNMKS DWLKSVQLWN QPDPLLPKEE RTQEKMVDTV VKKDESMKKE AMANGGERRK REAEKDGGRK QRRCWSSQLH RRFLNALQHL
201: GGPHVATPKQ IKELMKVDGL TNDEVKSHLQ KYRLHTRRPS QTVPNNGNSQ TQHLVVVEGI WVPKSDHSTG RTTGGATTSG TTTRSTTGIY EAMAAPPLPQ
301: WPSHSNFRPS IIVEEKGSGS PSEEVVVRCS SPAMSSSTRN HYVKNI
101: DDEHGNHDPD NDSEDKNMKS DWLKSVQLWN QPDPLLPKEE RTQEKMVDTV VKKDESMKKE AMANGGERRK REAEKDGGRK QRRCWSSQLH RRFLNALQHL
201: GGPHVATPKQ IKELMKVDGL TNDEVKSHLQ KYRLHTRRPS QTVPNNGNSQ TQHLVVVEGI WVPKSDHSTG RTTGGATTSG TTTRSTTGIY EAMAAPPLPQ
301: WPSHSNFRPS IIVEEKGSGS PSEEVVVRCS SPAMSSSTRN HYVKNI
001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
Arabidopsis Description
HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.