Factsheet for HORVU2Hr1G020140.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G030940.1
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3
HORVU5Hr1G053740.1
HORVU6Hr1G087650.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	HORVU4Hr1G019530.1	AT1G35670.1	19130088
AT1G25550.1	HORVU5Hr1G032550.3	AT1G35670.1	19130088
AT1G68670.1	HORVU2Hr1G030940.1	AT2G04630.1	21798944
AT1G68670.1	HORVU6Hr1G087650.1	AT3G05530.1	21798944
AT1G68670.1	HORVU5Hr1G053740.1	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G135600.1	Wheat	nucleus	63.44	93.71
TraesCS2D01G119100.1	Wheat	nucleus	71.18	91.54
TraesCS2A01G116100.2	Wheat	plastid	76.21	82.95
Os02t0325600-01	Rice	nucleus	54.35	68.2
EES15678	Sorghum	nucleus	50.1	56.06
Zm00001d023411_P001	Maize	nucleus	48.16	54.97
Zm00001d023402_P001	Maize	nucleus	48.74	54.9
GSMUA_Achr11P...	Banana	nucleus	35.59	49.86
GSMUA_Achr6P09870_001	Banana	nucleus	32.11	48.82
GSMUA_Achr8P18270_001	Banana	nucleus	34.62	48.25
VIT_01s0011g03110.t01	Wine grape	nucleus	33.08	48.03
GSMUA_Achr3P21090_001	Banana	nucleus	34.43	47.72
GSMUA_Achr10P...	Banana	nucleus	27.85	46.45
PGSC0003DMT400002162	Potato	nucleus	32.88	45.21
AT1G25550.1	Thale cress	nucleus	28.63	43.02
Solyc05g009720.2.1	Tomato	nucleus	32.88	42.5
AT1G68670.1	Thale cress	nucleus	28.82	42.09
CDX81535	Canola	nucleus	27.47	41.4
CDY51129	Canola	nucleus	25.53	41.25
CDX95998	Canola	nucleus	28.63	41.23
Bra004330.1-P	Field mustard	nucleus	28.43	40.95
CDY20522	Canola	nucleus	25.73	40.3
CDY38609	Canola	nucleus	28.05	40.17
CDY54503	Canola	nucleus	28.24	39.67
Bra038360.1-P	Field mustard	nucleus	28.05	39.4
KRG92028	Soybean	nucleus	29.01	39.37
CDX83554	Canola	nucleus	26.89	39.27
KRH75476	Soybean	nucleus	28.63	39.05
CDY13584	Canola	nucleus	26.89	38.94
KRH34759	Soybean	nucleus	28.82	38.9
CDY04180	Canola	nucleus	25.34	38.87
KRH70595	Soybean	nucleus	27.85	38.81
AT1G13300.1	Thale cress	nucleus	25.73	38.66
CDY16075	Canola	nucleus	25.73	38.11
Bra025161.1-P	Field mustard	nucleus	27.85	38.1
CDY39188	Canola	nucleus	25.34	37.64
Bra012471.1-P	Field mustard	nucleus	23.79	37.39
CDY19382	Canola	nucleus	24.56	37.35
Bra016734.1-P	Field mustard	nucleus	24.95	37.28
CDY21091	Canola	nucleus	24.95	37.28
CDY50179	Canola	nucleus	24.95	37.28
Bra017349.1-P	Field mustard	nucleus	25.53	36.87
AT3G25790.1	Thale cress	nucleus	25.34	36.69
CDX97993	Canola	nucleus	24.37	36.52
Bra019824.1-P	Field mustard	nucleus	24.18	34.25
HORVU2Hr1G006350.1	Barley	plastid	7.54	29.1
HORVU6Hr1G034270.1	Barley	plastid	7.35	28.36
HORVU5Hr1G018220.2	Barley	nucleus	19.34	26.45
HORVU3Hr1G022960.5	Barley	nucleus	25.92	25.72
HORVU2Hr1G062670.3	Barley	plastid	19.34	23.09
HORVU5Hr1G097560.4	Barley	nucleus, plastid	17.41	19.74
HORVU4Hr1G032990.1	Barley	cytosol	1.55	12.7

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A287HA09	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0045892	EnsemblPlantsGene:HORVU2Hr1G020140	EnsemblPlants:HORVU2Hr1G020140.3	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003
PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000B470F47	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:53458986..53461038

Molecular Weight (calculated)

56299.8 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.633

Length

517 amino acids

Sequence
(BLAST)

001: RETEWESPSP NILSVPILPS PRLRIYATAR RRFLSFLPSF FPPFPHLLRP LSAQFFPWGR INPPIGRDHL RAAAMEVEVQ ADRDGARRRL RDYLLALEEE
101: RRKIHVFQRE LPLCLDLVTQ STHPPYRHIP YSHPSHLSIW LESLINDEHA RICVVCDVMS AAIEGMKSQM GGAASEETVS DHDGPVLEEF IPLKPSLSPS
201: SSDDETSTHA PAPVSNAKAE TPPPTPTPTP ETKKAMPDWL QSAQLLTWSE PQQSSSLQKV LPCRPVALNA TRTGGAFHPF EKEKQPEAEL PASSTTAPAS
301: SALVGDSGDK ATSDTEVHDK DSKDATEKDT DKDKEGQSSQ PNRKPRRCWA PELHRRFLQA LQQLGGSHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT
401: SRRPSSTAQS SGAATTTQPA PQFFVVGSCI WVPQQEYAAA AAAAAAATDA TNVAPGSANK VYAPTATLPS GVKPHSKEQS SRRSEGPMSG DTGGVNSDSD
501: NPAMSSSSSQ TTSAGHP

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.