Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51129 | Canola | nucleus | 66.28 | 71.25 |
| CDY20522 | Canola | nucleus | 67.73 | 70.61 |
| Bra012471.1-P | Field mustard | nucleus | 65.12 | 68.09 |
| AT1G68670.1 | Thale cress | nucleus | 62.21 | 60.45 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 55.52 | 53.65 |
| PGSC0003DMT400002162 | Potato | nucleus | 50.87 | 46.54 |
| AT1G13300.1 | Thale cress | nucleus | 45.35 | 45.35 |
| Solyc05g009720.2.1 | Tomato | nucleus | 52.62 | 45.25 |
| KRH70595 | Soybean | nucleus | 48.26 | 44.74 |
| GSMUA_Achr10P... | Banana | nucleus | 39.83 | 44.19 |
| KRH75476 | Soybean | nucleus | 48.55 | 44.06 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 43.31 | 43.82 |
| KRH34759 | Soybean | nucleus | 48.55 | 43.6 |
| KRG92028 | Soybean | nucleus | 47.97 | 43.31 |
| AT3G25790.1 | Thale cress | nucleus | 43.9 | 42.3 |
| GSMUA_Achr11P... | Banana | nucleus | 44.77 | 41.73 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 44.19 | 40.97 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 43.31 | 39.95 |
| Os02t0325600-01 | Rice | nucleus | 45.64 | 38.11 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.49 | 36.98 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 43.02 | 36.82 |
| EES15678 | Sorghum | nucleus | 47.09 | 35.06 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 35.47 | 34.86 |
| Zm00001d023411_P001 | Maize | nucleus | 45.64 | 34.66 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 30.52 | 34.09 |
| Zm00001d023402_P001 | Maize | nucleus | 45.35 | 33.99 |
| TraesCS2A01G116100.2 | Wheat | plastid | 42.15 | 30.53 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 43.02 | 28.63 |
| AT4G37180.2 | Thale cress | nucleus | 29.94 | 28.37 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.5 | 26.06 |
| AT2G03500.1 | Thale cress | nucleus | 31.4 | 25.0 |
| AT1G49560.1 | Thale cress | nucleus | 23.84 | 24.62 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:839142 | ProteinID:AAG50807.1 | ProteinID:AEE30641.1 | EMBL:AF326890 |
| EMBL:AF339707 | EMBL:AF372906 | ArrayExpress:AT1G25550 | EnsemblPlantsGene:AT1G25550 | RefSeq:AT1G25550 | TAIR:AT1G25550 |
| RefSeq:AT1G25550-TAIR-G | EnsemblPlants:AT1G25550.1 | TAIR:AT1G25550.1 | EMBL:AY085913 | EMBL:BT002674 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_564236.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 | UniProt:Q9FPE8 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI00000AC450 | SEG:seg | : | : | : | : |
Description
HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
Coordinates
chr1:+:8976326..8978305
Molecular Weight (calculated)
38851.6 Da
IEP (calculated)
7.578
GRAVY (calculated)
-0.979
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.