Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51048 | Canola | nucleus | 65.47 | 72.43 |
| Bra018794.1-P | Field mustard | nucleus | 65.17 | 71.85 |
| CDY71327 | Canola | nucleus | 67.27 | 67.07 |
| Bra040662.1-P | Field mustard | nucleus | 64.86 | 66.26 |
| CDY59732 | Canola | nucleus | 49.55 | 64.45 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 30.03 | 49.51 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 43.24 | 35.91 |
| HORVU2Hr1G006350.1 | Barley | plastid | 13.21 | 32.84 |
| Os03t0764600-01 | Rice | nucleus | 33.63 | 32.18 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 32.73 | 32.15 |
| KRH71185 | Soybean | nucleus | 39.94 | 32.13 |
| HORVU6Hr1G034270.1 | Barley | plastid | 12.91 | 32.09 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 32.13 | 32.04 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 32.13 | 32.04 |
| PGSC0003DMT400066352 | Potato | nucleus | 38.44 | 31.84 |
| KRG89233 | Soybean | nucleus | 35.14 | 31.79 |
| Zm00001d034160_P001 | Maize | nucleus | 32.13 | 31.66 |
| Solyc01g108300.2.1 | Tomato | nucleus | 38.44 | 31.6 |
| KRH49770 | Soybean | nucleus | 34.53 | 31.34 |
| KRH50234 | Soybean | nucleus | 38.74 | 31.31 |
| KXG37487 | Sorghum | nucleus | 31.83 | 30.99 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 35.14 | 30.87 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 34.83 | 30.61 |
| GSMUA_Achr10P... | Banana | nucleus | 35.14 | 30.15 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 29.13 | 30.12 |
| Zm00001d013202_P001 | Maize | nucleus | 32.73 | 30.11 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 35.44 | 30.1 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 33.03 | 30.05 |
| Os03t0241001-00 | Rice | plastid | 12.91 | 29.86 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 29.73 | 29.64 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 31.53 | 29.58 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 33.03 | 29.57 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 30.33 | 29.28 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 31.23 | 29.21 |
| Os07t0119300-01 | Rice | nucleus | 30.93 | 29.01 |
| GSMUA_Achr10P... | Banana | nucleus | 33.93 | 28.9 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 29.43 | 28.82 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 32.13 | 28.31 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 31.83 | 28.27 |
| Zm00001d018698_P001 | Maize | nucleus | 30.93 | 27.91 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 31.53 | 27.85 |
| Os12t0586300-00 | Rice | extracellular | 33.03 | 27.85 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 31.53 | 27.78 |
| TraesCS5D01G411800.1 | Wheat | plastid | 32.13 | 27.16 |
| EER95793 | Sorghum | nucleus | 31.83 | 26.97 |
| AT4G37180.2 | Thale cress | nucleus | 28.83 | 26.45 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 31.53 | 26.12 |
| AT1G68670.1 | Thale cress | nucleus | 27.63 | 25.99 |
| Zm00001d030891_P001 | Maize | nucleus | 28.53 | 25.96 |
| OQU79454 | Sorghum | nucleus | 30.93 | 25.31 |
| AT3G25790.1 | Thale cress | nucleus | 27.03 | 25.21 |
| AT1G13300.1 | Thale cress | nucleus | 25.83 | 25.0 |
| HORVU2Hr1G062670.3 | Barley | plastid | 31.53 | 24.25 |
| AT2G03500.1 | Thale cress | nucleus | 31.23 | 24.07 |
| AT1G25550.1 | Thale cress | nucleus | 24.62 | 23.84 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 27.33 | 19.96 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 3.3 | 17.46 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:841380 | UniProt:A0A178WF13 | ProteinID:AAG13042.1 | ProteinID:AEE32442.1 |
| EMBL:AK221631 | ArrayExpress:AT1G49560 | EnsemblPlantsGene:AT1G49560 | RefSeq:AT1G49560 | TAIR:AT1G49560 | RefSeq:AT1G49560-TAIR-G |
| EnsemblPlants:AT1G49560.1 | TAIR:AT1G49560.1 | EMBL:AY086694 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| RefSeq:NP_564549.1 | ProteinID:OAP16724.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000191 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF7 | UniProt:Q9FX84 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI00000A035E | SEG:seg | : | : | : | : |
Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
Coordinates
chr1:+:18342451..18344452
Molecular Weight (calculated)
37383.6 Da
IEP (calculated)
7.906
GRAVY (calculated)
-0.753
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.