Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69259 | Canola | nucleus | 69.42 | 78.26 |
| CDX75610 | Canola | nucleus | 69.97 | 78.15 |
| Bra011720.1-P | Field mustard | nucleus | 69.15 | 77.23 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 38.84 | 36.53 |
| Solyc02g090400.2.1 | Tomato | nucleus | 36.09 | 35.31 |
| KRH28514 | Soybean | nucleus | 32.78 | 34.8 |
| PGSC0003DMT400026096 | Potato | nucleus | 34.99 | 34.79 |
| Zm00001d034160_P001 | Maize | nucleus | 32.23 | 34.62 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 32.23 | 34.51 |
| KXG37487 | Sorghum | nucleus | 32.51 | 34.5 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 30.85 | 33.53 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 30.85 | 33.53 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 30.58 | 33.23 |
| KRH76947 | Soybean | nucleus | 33.06 | 32.7 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 35.26 | 32.65 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 28.93 | 32.61 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 33.33 | 31.93 |
| Os03t0764600-01 | Rice | nucleus | 30.3 | 31.61 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 32.23 | 31.2 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 29.48 | 31.01 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 31.68 | 30.91 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 31.96 | 30.77 |
| GSMUA_Achr10P... | Banana | nucleus | 33.06 | 30.69 |
| GSMUA_Achr10P... | Banana | nucleus | 32.78 | 30.67 |
| Os03t0241001-00 | Rice | plastid | 12.12 | 30.56 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 31.68 | 30.42 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 31.41 | 30.16 |
| Os07t0119300-01 | Rice | nucleus | 29.48 | 30.14 |
| AT1G25550.1 | Thale cress | nucleus | 28.37 | 29.94 |
| Zm00001d013202_P001 | Maize | nucleus | 29.75 | 29.83 |
| KRH04674 | Soybean | nucleus | 29.48 | 29.32 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 28.65 | 29.3 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 27.27 | 29.12 |
| Zm00001d018698_P001 | Maize | nucleus | 29.48 | 29.0 |
| AT1G49560.1 | Thale cress | nucleus | 26.45 | 28.83 |
| Zm00001d030891_P001 | Maize | nucleus | 28.93 | 28.69 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 28.1 | 28.65 |
| AT1G68670.1 | Thale cress | nucleus | 27.82 | 28.53 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 28.65 | 28.42 |
| HORVU6Hr1G034270.1 | Barley | plastid | 10.47 | 28.36 |
| HORVU2Hr1G006350.1 | Barley | plastid | 10.47 | 28.36 |
| AT1G13300.1 | Thale cress | nucleus | 26.72 | 28.2 |
| TraesCS5D01G411800.1 | Wheat | plastid | 30.58 | 28.17 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 29.2 | 27.97 |
| EER95793 | Sorghum | nucleus | 30.03 | 27.74 |
| Os12t0586300-00 | Rice | extracellular | 30.03 | 27.59 |
| AT3G25790.1 | Thale cress | nucleus | 26.72 | 27.17 |
| OQU79454 | Sorghum | nucleus | 30.3 | 27.03 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 28.65 | 25.87 |
| HORVU2Hr1G062670.3 | Barley | plastid | 28.1 | 23.56 |
| AT2G03500.1 | Thale cress | nucleus | 27.55 | 23.15 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 26.45 | 21.05 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.2 | 12.7 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:829872 | ProteinID:AEE86762.1 | ProteinID:AEE86763.1 | EMBL:AK316664 |
| ArrayExpress:AT4G37180 | EnsemblPlantsGene:AT4G37180 | RefSeq:AT4G37180 | TAIR:AT4G37180 | RefSeq:AT4G37180-TAIR-G | EnsemblPlants:AT4G37180.2 |
| TAIR:AT4G37180.2 | EMBL:AY039841 | Unigene:At.4657 | EMBL:BT028985 | ProteinID:CAB16780.1 | ProteinID:CAB80384.1 |
| UniProt:F4JRB0 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010629 | GO:GO:0044212 | GO:GO:0048449 | GO:GO:0090701 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_568018.1 | RefSeq:NP_849513.1 | PFAM:PF00249 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF2 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EMBL:U62741 | UniParc:UPI0000196F28 |
| SEG:seg | : | : | : | : | : |
Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
Coordinates
chr4:+:17504564..17506504
Molecular Weight (calculated)
41681.2 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.928
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEEIVFL CVAIGALKDE ARKGLSLMAS
101: NGKFDDVERA KPETDKKSWM SSAQLWISNP NSQFRSTNEE EEDRCVSQNP FQTCNYPNQG GVFMPFNRPP PPPPPAPLSL MTPTSEMMMD YSRIEQSHHH
201: HQFNKPSSQS HHIQKKEQRR RWSQELHRKF VDALHRLGGP QVATPKQIRD LMKVDGLTND EVKSHLQKYR MHIRKHPLHP TKTLSSSDQP GVLERESQSL
301: ISLSRSDSPQ SPLVARGLFS SNVGHSSEED EEEEDEEEEK SDGRSSCRND ETKKKRQVLD LEL
101: NGKFDDVERA KPETDKKSWM SSAQLWISNP NSQFRSTNEE EEDRCVSQNP FQTCNYPNQG GVFMPFNRPP PPPPPAPLSL MTPTSEMMMD YSRIEQSHHH
201: HQFNKPSSQS HHIQKKEQRR RWSQELHRKF VDALHRLGGP QVATPKQIRD LMKVDGLTND EVKSHLQKYR MHIRKHPLHP TKTLSSSDQP GVLERESQSL
301: ISLSRSDSPQ SPLVARGLFS SNVGHSSEED EEEEDEEEEK SDGRSSCRND ETKKKRQVLD LEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.