Factsheet for Zm00001d018698_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007962_P001	Maize	extracellular, nucleus	80.49	86.09
EER95793	Sorghum	nucleus	85.37	80.15
TraesCS2A01G264800.1	Wheat	nucleus	69.11	71.83
TraesCS2D01G259200.2	Wheat	nucleus	68.56	71.07
Os07t0119300-01	Rice	nucleus	66.12	68.73
TraesCS2B01G277300.1	Wheat	nucleus	67.75	62.19
HORVU2Hr1G062670.3	Barley	plastid	68.56	58.43
Zm00001d034160_P001	Maize	nucleus	47.97	52.37
Zm00001d013202_P001	Maize	nucleus	47.43	48.34
Zm00001d030891_P001	Maize	nucleus	38.21	38.52
GSMUA_Achr9P26570_001	Banana	nucleus	40.92	38.52
GSMUA_Achr7P00660_001	Banana	nucleus	34.96	38.05
GSMUA_Achr10P...	Banana	nucleus	40.11	37.85
GSMUA_Achr6P34680_001	Banana	nucleus	38.75	37.73
GSMUA_Achr4P32500_001	Banana	nucleus	34.69	37.65
GSMUA_Achr10P...	Banana	nucleus	39.3	37.37
GSMUA_Achr4P23210_001	Banana	nucleus	36.86	36.56
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	33.06	36.53
GSMUA_Achr2P13380_001	Banana	nucleus	35.77	36.07
VIT_03s0063g01060.t01	Wine grape	nucleus	39.02	35.91
GSMUA_Achr4P28210_001	Banana	nucleus	30.89	35.4
KRH28514	Soybean	nucleus	32.79	35.38
CDY40421	Canola	nucleus	15.45	34.97
CDY51048	Canola	nucleus	28.46	34.88
GSMUA_Achr6P00650_001	Banana	nucleus	35.77	34.83
KRG89233	Soybean	nucleus	34.69	34.78
Bra018794.1-P	Field mustard	nucleus	28.46	34.77
VIT_07s0197g00060.t01	Wine grape	nucleus	35.5	33.94
CDY59732	Canola	nucleus	23.31	33.59
CDX69259	Canola	nucleus	29.27	33.54
CDX75610	Canola	nucleus	29.54	33.54
KRH49770	Soybean	nucleus	33.33	33.52
CDY72117	Canola	nucleus	16.53	33.33
Bra017795.1-P	Field mustard	nucleus	26.56	33.33
CDY42715	Canola	nucleus	26.56	33.33
KRH71185	Soybean	nucleus	37.4	33.33
KRH50234	Soybean	nucleus	37.13	33.25
KRH76947	Soybean	nucleus	33.06	33.24
PGSC0003DMT400026096	Potato	nucleus	32.79	33.15
Solyc02g090400.2.1	Tomato	nucleus	33.06	32.88
Solyc01g108300.2.1	Tomato	nucleus	36.04	32.84
PGSC0003DMT400066352	Potato	nucleus	35.77	32.84
Bra011720.1-P	Field mustard	nucleus	28.73	32.62
CDY44057	Canola	nucleus	28.18	32.4
Bra010581.1-P	Field mustard	nucleus	27.37	32.37
CDY71327	Canola	nucleus	29.27	32.34
Bra040662.1-P	Field mustard	nucleus	28.46	32.21
AT1G49560.1	Thale cress	nucleus	27.91	30.93
KRH04674	Soybean	nucleus	29.54	29.86
AT4G37180.2	Thale cress	nucleus	29.0	29.48
CDX69206	Canola	nucleus	12.2	28.85
CDY22459	Canola	nucleus	26.02	23.59
Zm00001d023411_P001	Maize	nucleus	27.64	22.52
Zm00001d039637_P001	Maize	nucleus	31.98	22.01
Zm00001d023402_P001	Maize	nucleus	27.37	22.0
CDY29342	Canola	cytosol, mitochondrion, nucleus	11.11	20.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A1D6HRM9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM51140.1	ProteinID:ONM51141.1
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF15	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0002209C9A	EnsemblPlantsGene:Zm00001d018698	EnsemblPlants:Zm00001d018698_P001	EnsemblPlants:Zm00001d018698_T001	SEG:seg

Description

Homeodomain-like superfamily protein

Coordinates

chr7:-:2706028..2708111

Molecular Weight (calculated)

39868.0 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.617

Length

369 amino acids

Sequence
(BLAST)

001: MGLDVMEIGM GADLSLDLRH FASKAVRQSK DDTPAPDMDA CIRRLEEERG KIEMFKRDLP LCARLLADVI DVMKEEAGKK KTTTRRRSDR RLASAAADDE
101: EEEADGATAD KSKWMSTAQL WTGDSGREDA ESEKQDKGRC SPEARSRGAL LPFKADVGSG APAFAPLFLR TDDKAAAARV GVPDLSSLLS PPATMPPADA
201: GAEESRRQVV GFAQAAARAA AMAPSAPALG LQSQQQQQQQ QQARKARRCW STELHRKFVA ALDQLGGPQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH
301: NRRAPGSGVV RQPIVLVGGL WIPQEQGSPQ SGSPHGPLHH LSTSVAAVSS AATASCEEED GRSESYGWK

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.