Factsheet for Bra017795.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42715	Canola	nucleus	98.3	98.3
Bra010581.1-P	Field mustard	nucleus	70.41	66.35
Bra011720.1-P	Field mustard	nucleus	72.11	65.23
KRH28514	Soybean	nucleus	38.1	32.75
VIT_07s0197g00060.t01	Wine grape	nucleus	42.86	32.64
GSMUA_Achr7P00660_001	Banana	nucleus	37.41	32.45
Solyc02g090400.2.1	Tomato	nucleus	39.8	31.54
PGSC0003DMT400026096	Potato	nucleus	38.44	30.96
KRH76947	Soybean	nucleus	38.44	30.79
KRH04674	Soybean	nucleus	37.76	30.41
Zm00001d034160_P001	Maize	nucleus	34.69	30.18
KXG37487	Sorghum	nucleus	34.69	29.82
TraesCS5A01G401600.1	Wheat	nucleus	33.67	29.64
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	33.67	29.64
TraesCS5B01G406300.2	Wheat	nucleus	32.99	29.04
Os07t0119300-01	Rice	nucleus	35.03	29.01
GSMUA_Achr4P28210_001	Banana	nucleus	31.63	28.88
GSMUA_Achr9P26570_001	Banana	nucleus	38.44	28.83
GSMUA_Achr4P23210_001	Banana	nucleus	36.39	28.76
Zm00001d007962_P001	Maize	extracellular, nucleus	33.67	28.7
GSMUA_Achr6P34680_001	Banana	nucleus	36.73	28.5
Os03t0241001-00	Rice	plastid	13.95	28.47
Os03t0764600-01	Rice	nucleus	33.67	28.45
GSMUA_Achr10P...	Banana	nucleus	37.07	28.09
Bra018794.1-P	Field mustard	nucleus	28.57	27.81
GSMUA_Achr10P...	Banana	nucleus	36.73	27.62
Bra040662.1-P	Field mustard	nucleus	30.61	27.61
Zm00001d013202_P001	Maize	nucleus	33.67	27.35
TraesCS2A01G264800.1	Wheat	nucleus	32.65	27.04
TraesCS5D01G081000.1	Wheat	nucleus	34.35	26.93
Zm00001d018698_P001	Maize	nucleus	33.33	26.56
TraesCS5B01G075300.1	Wheat	nucleus	34.01	26.53
GSMUA_Achr4P32500_001	Banana	nucleus	30.61	26.47
TraesCS5A01G068900.2	Wheat	nucleus	34.01	26.45
TraesCS2D01G259200.2	Wheat	nucleus	31.97	26.4
HORVU5Hr1G018220.2	Barley	nucleus	33.67	26.19
HORVU2Hr1G006350.1	Barley	plastid	11.9	26.12
GSMUA_Achr2P13380_001	Banana	nucleus	32.31	25.96
EER95793	Sorghum	nucleus	34.35	25.7
Bra012471.1-P	Field mustard	nucleus	28.57	25.53
Zm00001d030891_P001	Maize	nucleus	31.63	25.41
HORVU6Hr1G034270.1	Barley	plastid	11.56	25.37
TraesCS5D01G411800.1	Wheat	plastid	33.33	24.87
Bra004330.1-P	Field mustard	nucleus	29.93	24.51
Bra016734.1-P	Field mustard	nucleus	28.57	24.28
GSMUA_Achr6P00650_001	Banana	nucleus	31.29	24.27
Bra038360.1-P	Field mustard	nucleus	30.27	24.18
Bra026548.1-P	Field mustard	nucleus	34.69	24.17
Bra025115.1-P	Field mustard	nucleus	34.69	24.11
TraesCS2B01G277300.1	Wheat	nucleus	32.31	23.63
Bra025161.1-P	Field mustard	nucleus	30.27	23.55
Bra017349.1-P	Field mustard	nucleus	28.57	23.46
Os12t0586300-00	Rice	extracellular	31.29	23.29
OQU79454	Sorghum	nucleus	31.29	22.6
Bra019824.1-P	Field mustard	nucleus	27.89	22.47
HORVU2Hr1G062670.3	Barley	plastid	31.97	21.71
HORVU5Hr1G097560.4	Barley	nucleus, plastid	28.23	18.2
HORVU4Hr1G032990.1	Barley	cytosol	2.38	11.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra017795	EnsemblPlants:Bra017795.1	EnsemblPlants:Bra017795.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DMR0
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF2	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0002540CCD	SEG:seg	:	:	:

Description

AT4G37180 (E=7e-051) | myb family transcription factor

Coordinates

chrA03:-:30524376..30525602

Molecular Weight (calculated)

33782.3 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.815

Length

294 amino acids

Sequence
(BLAST)

001: MSLDLNLYSL AKPLSQFLND VSKIKDNHSK LFEIDEYVGK LEEERKKIDV FKRELPLCML LMNEAIERLK EEASSVKLEI DNKKNWMNST QLWISKTNPQ
101: LPSTNGEEDR CVTQTCSNNN NSNQGGAILS FNVPPRPPPL SLRTPILTDY SSRIEQSHPI QKKELRRRWS EDLHRRFVDA LQMIGGSQVA TPKQIKDIMK
201: VDGLTNDEIK SHLQCEMINL LQKYRMHIHK HPAKILTASD QHGLSRSDSP QGPLVDRGLF SNNGHSSEEE EKSDGRSWKS ESRRKRQGLL DLEL

Best Arabidopsis Sequence Match ( AT4G37180.1 )
(BLAST)

001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL

Arabidopsis Description

HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.