Factsheet for Bra019824.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97993	Canola	nucleus	89.59	94.78
Bra016734.1-P	Field mustard	nucleus	74.79	78.9
Bra025161.1-P	Field mustard	nucleus	57.26	55.29
Bra017349.1-P	Field mustard	nucleus	53.97	55.03
VIT_01s0011g03110.t01	Wine grape	nucleus	46.58	47.75
Bra038360.1-P	Field mustard	nucleus	43.01	42.66
PGSC0003DMT400002162	Potato	nucleus	43.84	42.55
Bra004330.1-P	Field mustard	nucleus	41.64	42.34
Bra012471.1-P	Field mustard	nucleus	37.26	41.34
Solyc05g009720.2.1	Tomato	nucleus	44.66	40.75
GSMUA_Achr1P23220_001	Banana	nucleus	27.12	37.36
GSMUA_Achr8P18270_001	Banana	nucleus	37.53	36.93
GSMUA_Achr11P...	Banana	nucleus	36.99	36.59
GSMUA_Achr6P09870_001	Banana	nucleus	33.97	36.47
GSMUA_Achr10P...	Banana	nucleus	30.96	36.45
GSMUA_Achr3P21090_001	Banana	nucleus	35.89	35.12
Os02t0325600-01	Rice	nucleus	35.89	31.8
TraesCS2D01G119100.1	Wheat	nucleus	33.97	30.85
GSMUA_Achr4P03680_001	Banana	nucleus	25.21	29.87
Bra010581.1-P	Field mustard	nucleus	24.66	28.85
EES15678	Sorghum	nucleus	35.89	28.36
Zm00001d023411_P001	Maize	nucleus	34.79	28.04
TraesCS2B01G135600.1	Wheat	nucleus	26.85	28.0
Bra017795.1-P	Field mustard	nucleus	22.47	27.89
Bra011720.1-P	Field mustard	nucleus	24.66	27.69
Zm00001d023402_P001	Maize	nucleus	34.52	27.45
Bra018794.1-P	Field mustard	nucleus	22.19	26.82
GSMUA_Achr4P13650_001	Banana	plastid	11.78	26.06
Bra040662.1-P	Field mustard	nucleus	23.01	25.77
TraesCS2A01G116100.2	Wheat	plastid	33.15	25.47
Bra025115.1-P	Field mustard	nucleus	29.32	25.3
HORVU2Hr1G020140.3	Barley	nucleus, plastid	34.25	24.18
Bra026548.1-P	Field mustard	nucleus	27.95	24.17

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra019824	EnsemblPlants:Bra019824.1	EnsemblPlants:Bra019824.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DTI1	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253EBEC	SEG:seg	:	:

Description

AT1G13300 (E=2e-131) | myb family transcription factor

Coordinates

chrA06:-:4164475..4166051

Molecular Weight (calculated)

41527.6 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.775

Length

365 amino acids

Sequence
(BLAST)

001: MDYNQEECGQ YIEALEEERR KILVFQRELP LCLDLVTQAI ERCTKEITET ATDNVYGQSE CSEQTTGQCT PVLEQFLTIK DSSPFNEEEV EEEFEDEQGN
101: HDPENDSEDK NMKSDWLKSV QLWNQPDPLL PKESQQMMET VVKRDESMRE DAMANSGERR RRETERKQRR CWSSQLHRRF LNALQHLGGP HVATPKQIRE
201: LMKVDGLTND EVKSHLQKYR LHTRRPSQTV PNNGNSQKQH FVVVGGLWVP QSDYSTGKTT GRATTSGTTT TTTTTTTTGI YGAMAAPPPP QWPSHFNFTP
301: SIIVEEGSGS HSDEVVVRCS SPAMSSSTRN CFSKPTHIFK SNPKPTLFFL SILFINKISI LSLCF

Best Arabidopsis Sequence Match ( AT1G13300.1 )
(BLAST)

001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN

Arabidopsis Description

HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.