Factsheet for Bra025115.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51214	Canola	nucleus	98.82	98.82
AT2G03500.1	Thale cress	nucleus	88.18	86.34
Bra026548.1-P	Field mustard	nucleus	85.58	85.78
KRH03776	Soybean	nucleus	54.61	51.11
VIT_11s0016g04600.t01	Wine grape	nucleus	54.61	50.22
KRH56661	Soybean	nucleus	53.66	50.0
KRH54846	Soybean	nucleus	53.19	48.18
GSMUA_Achr6P05330_001	Banana	nucleus	47.99	48.1
KRH63037	Soybean	nucleus	52.25	47.84
Solyc12g006800.1.1	Tomato	nucleus	47.99	46.24
PGSC0003DMT400078136	Potato	nucleus	48.23	45.84
GSMUA_Achr10P...	Banana	nucleus	41.37	43.86
TraesCS3B01G144100.1	Wheat	nucleus	41.84	37.5
TraesCS3A01G123700.1	Wheat	nucleus	41.61	37.29
TraesCS3D01G125300.1	Wheat	nucleus	41.61	37.29
Os01t0176700-01	Rice	nucleus	39.72	35.22
EES02372	Sorghum	nucleus	41.37	34.86
Bra017795.1-P	Field mustard	nucleus	24.11	34.69
Bra011720.1-P	Field mustard	nucleus	25.77	33.54
HORVU3Hr1G022960.5	Barley	nucleus	40.9	33.21
Bra010581.1-P	Field mustard	nucleus	24.35	33.01
Zm00001d039637_P001	Maize	nucleus	40.9	32.28
Bra018794.1-P	Field mustard	nucleus	22.93	32.12
Bra040662.1-P	Field mustard	nucleus	24.11	31.29
Bra016734.1-P	Field mustard	nucleus	25.53	31.21
Bra004330.1-P	Field mustard	nucleus	26.0	30.64
Bra038360.1-P	Field mustard	nucleus	26.0	29.89
Bra019824.1-P	Field mustard	nucleus	25.3	29.32
Bra012471.1-P	Field mustard	nucleus	22.22	28.57
Bra025161.1-P	Field mustard	nucleus	25.3	28.31
Bra017349.1-P	Field mustard	nucleus	23.4	27.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra025115	EnsemblPlants:Bra025115.1	EnsemblPlants:Bra025115.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4E8K9
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253F807	SEG:seg	:

Description

AT2G03500 (E=2e-173) | myb family transcription factor

Coordinates

chrA06:-:23366027..23369053

Molecular Weight (calculated)

46860.2 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.898

Length

423 amino acids

Sequence
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGENFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYLA NNNNQSVVTR PVLEEFIPLR
101: NQPEKANNWM TTAQLWSQPE TKPKSIDQTT DQSPKDELAS SPKLGHVDAK QRNSGGAFHP FTKEQHLPEL ALSTEVKRFS PTNEHTNDHG NDESIINSGK
201: NNNNNINSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GQGPHLVVLG
301: GIWVPPEYTT AHGGTPTLYH HQVHHHNGNA ATQPPQHFCS SQEFYTTPPT PQPLHHQHFQ TFNGSSAGGA TSNDSAHHQL TDSAADEGKS LESGGGEGKG
401: LAALRQEGED QSNINGSEIT LKF

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.