Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21091 | Canola | nucleus | 100.0 | 100.0 |
| AT1G13300.1 | Thale cress | nucleus | 84.39 | 84.88 |
| Bra019824.1-P | Field mustard | nucleus | 78.9 | 74.79 |
| Bra017349.1-P | Field mustard | nucleus | 58.67 | 56.7 |
| Bra025161.1-P | Field mustard | nucleus | 60.98 | 55.82 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 48.55 | 47.19 |
| Bra012471.1-P | Field mustard | nucleus | 42.2 | 44.38 |
| Bra038360.1-P | Field mustard | nucleus | 45.38 | 42.66 |
| Bra004330.1-P | Field mustard | nucleus | 44.22 | 42.62 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.24 | 42.55 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.11 | 40.75 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.61 | 37.36 |
| GSMUA_Achr11P... | Banana | nucleus | 39.31 | 36.86 |
| GSMUA_Achr10P... | Banana | nucleus | 32.95 | 36.77 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 39.31 | 36.66 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 35.26 | 35.88 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 37.28 | 34.58 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 37.28 | 32.09 |
| Os02t0325600-01 | Rice | nucleus | 38.15 | 32.04 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 26.88 | 30.19 |
| Bra010581.1-P | Field mustard | nucleus | 26.01 | 28.85 |
| Bra017795.1-P | Field mustard | nucleus | 24.28 | 28.57 |
| Bra011720.1-P | Field mustard | nucleus | 26.59 | 28.31 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 28.61 | 28.29 |
| Bra018794.1-P | Field mustard | nucleus | 24.57 | 28.15 |
| EES15678 | Sorghum | nucleus | 36.99 | 27.71 |
| Zm00001d023411_P001 | Maize | nucleus | 36.13 | 27.59 |
| Zm00001d023402_P001 | Maize | nucleus | 35.84 | 27.02 |
| Bra040662.1-P | Field mustard | nucleus | 24.86 | 26.38 |
| TraesCS2A01G116100.2 | Wheat | plastid | 36.13 | 26.32 |
| Bra025115.1-P | Field mustard | nucleus | 31.21 | 25.53 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 37.28 | 24.95 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 11.85 | 24.85 |
| Bra026548.1-P | Field mustard | nucleus | 29.77 | 24.41 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EnsemblPlantsGene:Bra016734 | EnsemblPlants:Bra016734.1 | EnsemblPlants:Bra016734.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009719 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0016036 | GO:GO:0032107 | GO:GO:0080022 | GO:GO:1901699 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| UniProt:M4DJQ6 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002545E68 | SEG:seg |
Description
AT1G13300 (E=2e-153) | myb family transcription factor
Coordinates
chrA08:-:19729676..19731255
Molecular Weight (calculated)
39080.9 Da
IEP (calculated)
6.901
GRAVY (calculated)
-0.956
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKKLSNMDY KQKQERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPGTA TENMYGQSEC SEQTTGECTP VLEQFLTIKD SSTSNEEEEL
101: DDEHGNHDPD NDYEDKNMKS DWLKSVQLWN QPDPLLPKEE GTQEKMVDTV VKKDESMKKE AMANGGERRK REAEKDGGRK QRRCWSSQLH RRFLNALQHL
201: GGPHVATPKQ IKELMKIDGL TNDEVKSHLQ KYRLHTRRPS QTVSNNGNSQ AQHLVVVEGI WVPKSDHSTG RITGGATTSG TTTRSTTGIY GAMAAPPLPQ
301: WPSPSNFRPS IIVEEKGSGS PSEEVVFRCS SPAMSSSTRN HYVKNI
101: DDEHGNHDPD NDYEDKNMKS DWLKSVQLWN QPDPLLPKEE GTQEKMVDTV VKKDESMKKE AMANGGERRK REAEKDGGRK QRRCWSSQLH RRFLNALQHL
201: GGPHVATPKQ IKELMKIDGL TNDEVKSHLQ KYRLHTRRPS QTVSNNGNSQ AQHLVVVEGI WVPKSDHSTG RITGGATTSG TTTRSTTGIY GAMAAPPLPQ
301: WPSPSNFRPS IIVEEKGSGS PSEEVVFRCS SPAMSSSTRN HYVKNI
001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
Arabidopsis Description
HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.