Factsheet for Zm00001d023411_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d005520_P001
Zm00001d011093_P001
Zm00001d013780_P001
Zm00001d018409_P007
Zm00001d019980_P001
Zm00001d023560_P002
Zm00001d033099_P001
Zm00001d037481_P003
Zm00001d045163_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT1G25550.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT1G25550.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT1G68670.1	Zm00001d011093_P001	AT1G22630.1	21798944
AT1G68670.1	Zm00001d013780_P001	AT2G04630.1	21798944
AT1G68670.1	Zm00001d033099_P001	AT2G04630.1	21798944
AT1G68670.1	Zm00001d018409_P007	AT3G05530.1	21798944
AT1G68670.1	Zm00001d037481_P003	AT3G05530.1	21798944
AT1G68670.1	Zm00001d045163_P001	AT3G05530.1	21798944
AT1G68670.1	Zm00001d005520_P001	AT3G52155.1	21798944
AT1G68670.1	Zm00001d019980_P001	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023402_P001	Maize	nucleus	95.58	94.34
EES15678	Sorghum	nucleus	81.9	80.3
Os02t0325600-01	Rice	nucleus	58.28	64.08
TraesCS2D01G119100.1	Wheat	nucleus	54.75	61.69
TraesCS2B01G135600.1	Wheat	nucleus	45.7	59.14
TraesCS2A01G116100.2	Wheat	plastid	54.53	52.0
GSMUA_Achr6P09870_001	Banana	nucleus	37.97	50.59
VIT_01s0011g03110.t01	Wine grape	nucleus	37.97	48.31
HORVU2Hr1G020140.3	Barley	nucleus, plastid	54.97	48.16
GSMUA_Achr11P...	Banana	nucleus	38.85	47.7
GSMUA_Achr8P18270_001	Banana	nucleus	38.63	47.17
AT1G25550.1	Thale cress	nucleus	34.66	45.64
GSMUA_Achr3P21090_001	Banana	nucleus	37.31	45.31
GSMUA_Achr10P...	Banana	nucleus	30.91	45.16
CDY51129	Canola	nucleus	30.68	43.44
PGSC0003DMT400002162	Potato	nucleus	35.32	42.55
CDY20522	Canola	nucleus	30.68	42.12
AT1G68670.1	Thale cress	nucleus	32.45	41.53
CDX95998	Canola	nucleus	32.45	40.95
KRG92028	Soybean	nucleus	34.44	40.94
Solyc05g009720.2.1	Tomato	nucleus	35.98	40.75
Bra004330.1-P	Field mustard	nucleus	32.23	40.67
KRH34759	Soybean	nucleus	34.22	40.47
CDY38609	Canola	nucleus	32.23	40.44
CDX81535	Canola	nucleus	30.24	39.94
KRH75476	Soybean	nucleus	33.11	39.58
CDY54503	Canola	nucleus	32.01	39.4
Bra012471.1-P	Field mustard	nucleus	28.48	39.21
Bra038360.1-P	Field mustard	nucleus	31.79	39.13
KRH70595	Soybean	nucleus	32.01	39.08
AT1G13300.1	Thale cress	nucleus	28.7	37.79
CDY16075	Canola	nucleus	28.92	37.54
CDY04180	Canola	nucleus	27.81	37.39
CDY19382	Canola	nucleus	28.04	37.35
CDX97993	Canola	nucleus	28.04	36.81
CDX83554	Canola	nucleus	28.7	36.72
CDY13584	Canola	nucleus	28.48	36.13
CDY50179	Canola	nucleus	27.59	36.13
CDY21091	Canola	nucleus	27.59	36.13
Bra016734.1-P	Field mustard	nucleus	27.59	36.13
CDY39188	Canola	nucleus	27.37	35.63
Bra017349.1-P	Field mustard	nucleus	28.04	35.47
Bra025161.1-P	Field mustard	nucleus	29.36	35.19
Bra019824.1-P	Field mustard	nucleus	28.04	34.79
AT3G25790.1	Thale cress	nucleus	27.15	34.45
Zm00001d007962_P001	Maize	extracellular, nucleus	22.96	30.14
Zm00001d034160_P001	Maize	nucleus	21.19	28.4
Zm00001d030891_P001	Maize	nucleus	22.52	27.87
Zm00001d018698_P001	Maize	nucleus	22.52	27.64
Zm00001d013202_P001	Maize	nucleus	21.19	26.52
Zm00001d039637_P001	Maize	nucleus	28.92	24.44

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100193306	MapMan:15.5.2.3	ProteinID:AQK39280.1	UniProt:B4FEJ8	EMBL:BT035536
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EMBL:KJ726838
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001A595DA	EnsemblPlantsGene:Zm00001d023411	EnsemblPlants:Zm00001d023411_P001
EnsemblPlants:Zm00001d023411_T001	SEG:seg	:	:	:	:

Description

G2-like-transcription factor 5myb-like transcription factor family protein

Coordinates

chr10:+:5023685..5025660

Molecular Weight (calculated)

48704.7 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.693

Length

453 amino acids

Sequence
(BLAST)

001: MEMDPPPPPP LHADRRLRFR DYLLALEEER RKIQVFQREL PLCLDLVTQT IEGMRSHMDS VVVGSEETVS DHGGPVLEEF MPLKPTTLSS SSSQPQSQDD
101: HDSAHYLEHR RAAAATANDV VDADKDDEAL GDPETAAASS SRPLPHPETK KAMPDWLQSV QLWSNQQQPS VSPPQHQDEL LLPCRPVALN ACRKSGGAFQ
201: PFEKEKKKED KEEKQRAELE LPLPAAASSA VVGDSCDRAG ATDTDTDTAE NNKASSTKGG KDKEAQLSSQ APSRKARRCW APELHRRFLQ ALQQLGGSHV
301: ATPKQIRELM NVDGLTNDEV KSHLQKYRLH TRRPNSAAAA VQSGGTSVVA PPAAPQFVVV GGIWVPPPEY AAAAAAQPQQ VHVHLAGDAS GTTTTAADKV
401: YAPVATTLTP APRPRPRPGP ERQSSSCSGA RRNGDACSGS PAVSSSSSQT ASA

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.