Factsheet for Zm00001d005520_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52155.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98643	Sorghum	plastid	89.72	93.8
Zm00001d019980_P001	Maize	plastid	85.38	90.0
TraesCS5B01G174000.1	Wheat	mitochondrion, plastid	69.17	74.79
TraesCS5D01G181000.1	Wheat	mitochondrion, plastid	68.77	73.11
Os09t0287300-01	Rice	plastid	72.33	72.62
TraesCS5A01G174800.1	Wheat	mitochondrion, plastid	68.38	72.08
HORVU5Hr1G053740.1	Barley	plastid	62.45	65.56
KRH11677	Soybean	plastid	54.55	61.88
KRH36679	Soybean	plastid	55.73	61.3
CDY29066	Canola	plastid	50.99	59.17
CDX90616	Canola	plastid	50.99	58.9
Bra012818.1-P	Field mustard	plastid	50.59	58.45
AT3G52155.1	Thale cress	plastid	49.41	57.34
VIT_00s0875g00010.t01	Wine grape	plastid	52.17	56.41
PGSC0003DMT400070128	Potato	cytosol	50.59	52.03
Solyc04g015330.2.1	Tomato	plastid	50.2	51.63

Protein Annotations

EnsemblPlants:Zm00001d005520_P001	EnsemblPlants:Zm00001d005520_T001	EnsemblPlantsGene:Zm00001d005520	Gene3D:3.40.50.1240	InterPro:His_PPase_superfam	InterPro:His_Pase_superF_clade-1
InterPro:IPR029033	PANTHER:PTHR23029	PANTHER:PTHR23029:SF49	PFAM:PF00300	ProteinID:ONM21386.1	SEG:seg
SMART:SM00855	SUPFAM:SSF53254	UniParc:UPI0002215BD9	UniProt:A0A1D6ENL7	MapMan:35.1	:

Description

Phosphoglycerate mutase family protein

Coordinates

chr2:-:177218082..177221636

Molecular Weight (calculated)

26935.4 Da

IEP (calculated)

8.761

GRAVY (calculated)

-0.097

Length

253 amino acids

Sequence
(BLAST)

001: MSSTQPIGHS YRKMRAPAPP VPALLSRCSS PPSSAPLRLL TSSRTPAAFR PPPAVARSVS VSVDAPAAAT EPAVLGAPSS MPRRRLILLR HGESTAGGRS
101: TRDHDRPLSK AGRADAISVS NKLQQMGWIP ELILCSDAMR TKETLKILQE HVQGLSEAVV HFIPSFYSIA AMDGQTAEHL QKAICEYSSD EILTVMCMGH
201: NKGWEEAASM FSGDSVALET CNAALLEAAG KSWVEAFSVA GLGGWKLHGI VKP

Best Arabidopsis Sequence Match ( AT3G52155.1 )
(BLAST)

001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV

Arabidopsis Description

Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.