Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52155.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G52155.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G174000.1 | Wheat | mitochondrion, plastid | 97.06 | 98.72 |
| TraesCS5A01G174800.1 | Wheat | mitochondrion, plastid | 98.74 | 97.92 |
| HORVU5Hr1G053740.1 | Barley | plastid | 92.44 | 91.29 |
| Os09t0287300-01 | Rice | plastid | 77.31 | 73.02 |
| EER98643 | Sorghum | plastid | 73.95 | 72.73 |
| Zm00001d019980_P001 | Maize | plastid | 72.27 | 71.67 |
| Zm00001d005520_P001 | Maize | plastid | 73.11 | 68.77 |
| KRH11677 | Soybean | plastid | 55.46 | 59.19 |
| KRH36679 | Soybean | plastid | 56.3 | 58.26 |
| AT3G52155.1 | Thale cress | plastid | 51.26 | 55.96 |
| CDX90616 | Canola | plastid | 51.26 | 55.71 |
| CDY29066 | Canola | plastid | 50.84 | 55.5 |
| Bra012818.1-P | Field mustard | plastid | 50.84 | 55.25 |
| VIT_00s0875g00010.t01 | Wine grape | plastid | 53.36 | 54.27 |
| PGSC0003DMT400070128 | Potato | cytosol | 54.2 | 52.44 |
| Solyc04g015330.2.1 | Tomato | plastid | 53.78 | 52.03 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G181000.1 | EnsemblPlantsGene:TraesCS5D01G181000 | Gene3D:3.40.50.1240 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:His_PPase_superfam | InterPro:His_Pase_superF_clade-1 | InterPro:IPR029033 |
| PANTHER:PTHR23029 | PANTHER:PTHR23029:SF49 | PFAM:PF00300 | PFscan:PS51257 | SEG:seg | SMART:SM00855 |
| SUPFAM:SSF53254 | TIGR:cd07067 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:281208428..281211201
Molecular Weight (calculated)
25348.3 Da
IEP (calculated)
7.267
GRAVY (calculated)
-0.044
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAPPRLLSP PSSATAPHLL LYASSAACRL PPSAAAVARS VSVSTTVVDA PAAAAEPGSS DSASATPRRR LILLRHGDSA VGERFTRDHD RPLSKAGRAD
101: AISVSDKFHQ MGWIPELILC SDATRTKETL QIMQEHVQGL SQALVHFIPS FYSIAAMDGQ TAEHLQKAIC EYSTDEILTV MCMGHNKGWE EAASMFSGDS
201: VVLKTCNAAL LEAAGKSWIE AFSQAGLGGW KLHGIVKP
101: AISVSDKFHQ MGWIPELILC SDATRTKETL QIMQEHVQGL SQALVHFIPS FYSIAAMDGQ TAEHLQKAIC EYSTDEILTV MCMGHNKGWE EAASMFSGDS
201: VVLKTCNAAL LEAAGKSWIE AFSQAGLGGW KLHGIVKP
001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
Arabidopsis Description
Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.