Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52155.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G52155.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G181000.1 | Wheat | mitochondrion, plastid | 98.72 | 97.06 |
| TraesCS5A01G174800.1 | Wheat | mitochondrion, plastid | 98.29 | 95.83 |
| HORVU5Hr1G053740.1 | Barley | plastid | 91.03 | 88.38 |
| EER98643 | Sorghum | plastid | 75.64 | 73.14 |
| Os09t0287300-01 | Rice | plastid | 78.63 | 73.02 |
| Zm00001d019980_P001 | Maize | plastid | 73.93 | 72.08 |
| Zm00001d005520_P001 | Maize | plastid | 74.79 | 69.17 |
| KRH11677 | Soybean | plastid | 55.98 | 58.74 |
| KRH36679 | Soybean | plastid | 56.84 | 57.83 |
| AT3G52155.1 | Thale cress | plastid | 51.71 | 55.5 |
| CDX90616 | Canola | plastid | 51.71 | 55.25 |
| CDY29066 | Canola | plastid | 51.28 | 55.05 |
| Bra012818.1-P | Field mustard | plastid | 51.28 | 54.79 |
| VIT_00s0875g00010.t01 | Wine grape | plastid | 54.27 | 54.27 |
| PGSC0003DMT400070128 | Potato | cytosol | 55.13 | 52.44 |
| Solyc04g015330.2.1 | Tomato | plastid | 54.7 | 52.03 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G174000.1 | EnsemblPlantsGene:TraesCS5B01G174000 | Gene3D:3.40.50.1240 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:His_PPase_superfam | InterPro:His_Pase_superF_clade-1 | InterPro:IPR029033 |
| PANTHER:PTHR23029 | PANTHER:PTHR23029:SF49 | PFAM:PF00300 | SEG:seg | SMART:SM00855 | SUPFAM:SSF53254 |
| TIGR:cd07067 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:319328196..319330986
Molecular Weight (calculated)
25012.0 Da
IEP (calculated)
7.601
GRAVY (calculated)
-0.025
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAPPRLLSP PPSATAPHLL LYASSAVCRL PPSAAAVARS VSVSTTVVDA PAAAAEPGSS ATPRRRLILL RHGDSAVGER FTRDHDRPLS KAGRADAISV
101: SDKFHQMGWI PELILCSDAT RTKETLQIMQ EHVQGLSQAL VHFIPSFYSI AAMDGQTAEH LQKAICEYST DEILTVMCMG HNKGWEEAAS MFSGDSVVLK
201: TCNAALLEAA GKSWVEAFSQ AGLGGWKLHG IVKP
101: SDKFHQMGWI PELILCSDAT RTKETLQIMQ EHVQGLSQAL VHFIPSFYSI AAMDGQTAEH LQKAICEYST DEILTVMCMG HNKGWEEAAS MFSGDSVVLK
201: TCNAALLEAA GKSWVEAFSQ AGLGGWKLHG IVKP
001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
Arabidopsis Description
Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.