Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52155.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT3G52155.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g015330.2.1 | Tomato | plastid | 95.94 | 95.94 |
| KRH11677 | Soybean | plastid | 58.13 | 64.13 |
| KRH36679 | Soybean | plastid | 58.94 | 63.04 |
| AT3G52155.1 | Thale cress | plastid | 52.03 | 58.72 |
| VIT_00s0875g00010.t01 | Wine grape | plastid | 54.88 | 57.69 |
| CDX90616 | Canola | plastid | 50.41 | 56.62 |
| CDY29066 | Canola | plastid | 50.0 | 56.42 |
| Bra012818.1-P | Field mustard | plastid | 50.0 | 56.16 |
| TraesCS5B01G174000.1 | Wheat | mitochondrion, plastid | 52.44 | 55.13 |
| TraesCS5D01G181000.1 | Wheat | mitochondrion, plastid | 52.44 | 54.2 |
| EER98643 | Sorghum | plastid | 52.85 | 53.72 |
| TraesCS5A01G174800.1 | Wheat | mitochondrion, plastid | 52.03 | 53.33 |
| Zm00001d019980_P001 | Maize | plastid | 50.0 | 51.25 |
| Zm00001d005520_P001 | Maize | plastid | 52.03 | 50.59 |
| HORVU5Hr1G053740.1 | Barley | plastid | 48.78 | 49.79 |
| Os09t0287300-01 | Rice | plastid | 50.41 | 49.21 |
Protein Annotations
| EntrezGene:102589126 | Gene3D:3.40.50.1240 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:His_PPase_superfam | InterPro:His_Pase_superF_clade-1 | InterPro:IPR029033 |
| UniProt:M1CLQ5 | PFAM:PF00300 | EnsemblPlantsGene:PGSC0003DMG400027262 | PGSC:PGSC0003DMG400027262 | EnsemblPlants:PGSC0003DMT400070128 | PANTHER:PTHR23029 |
| PANTHER:PTHR23029:SF49 | SMART:SM00855 | SUPFAM:SSF53254 | UniParc:UPI000295C773 | RefSeq:XP_006350226.1 | SEG:seg |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027262]
Coordinates
chr4:-:9581205..9587168
Molecular Weight (calculated)
27112.5 Da
IEP (calculated)
7.891
GRAVY (calculated)
-0.164
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVVVASLVE PLQVPYNYYS CKKSQIKKNP KCVMVASSSS GVGSLVIETN QDQQQISTST ETPTTTLSSV AARRLILLRH AKSSWENRSI RDHDRPLSRS
101: GQLDAIKVSQ NLLKLGWIPQ LILSSDALRT QETLKIMQEQ VQAFLEAEVH FISSFYSVAA MDGQTTEHLR QAICKYSRDE ILTVMCMGHN RGWEEAASVL
201: SGVTVELKTC NAALLEATGK SWEEAFSLAG PGGWKLQGLV KPDTVV
101: GQLDAIKVSQ NLLKLGWIPQ LILSSDALRT QETLKIMQEQ VQAFLEAEVH FISSFYSVAA MDGQTTEHLR QAICKYSRDE ILTVMCMGHN RGWEEAASVL
201: SGVTVELKTC NAALLEATGK SWEEAFSLAG PGGWKLQGLV KPDTVV
001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
Arabidopsis Description
Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.