CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52155.1	CDY04768	AT1G22920.1	21798944
AT3G52155.1	CDY21400	AT1G22920.1	21798944
AT3G52155.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012818.1-P	Field mustard	plastid	99.54	99.09
CDX90616	Canola	plastid	98.17	97.72
AT3G52155.1	Thale cress	plastid	83.49	83.49
KRH11677	Soybean	plastid	60.55	59.19
KRH36679	Soybean	plastid	61.01	57.83
EER98643	Sorghum	plastid	58.72	52.89
Zm00001d019980_P001	Maize	plastid	57.34	52.08
TraesCS5B01G174000.1	Wheat	mitochondrion, plastid	55.05	51.28
Zm00001d005520_P001	Maize	plastid	59.17	50.99
TraesCS5D01G181000.1	Wheat	mitochondrion, plastid	55.5	50.84
PGSC0003DMT400070128	Potato	cytosol	56.42	50.0
Solyc04g015330.2.1	Tomato	plastid	56.42	50.0
TraesCS5A01G174800.1	Wheat	mitochondrion, plastid	55.05	50.0
VIT_00s0875g00010.t01	Wine grape	plastid	52.29	48.72
Os09t0287300-01	Rice	plastid	55.96	48.41
HORVU5Hr1G053740.1	Barley	plastid	51.38	46.47

Protein Annotations

EnsemblPlants:CDY29066	EnsemblPlantsGene:GSBRNA2T00041809001	Gene3D:3.40.50.1240	InterPro:His_PPase_superfam	InterPro:His_Pase_superF_clade-1	InterPro:IPR029033
PANTHER:PTHR23029	PANTHER:PTHR23029:SF49	PFAM:PF00300	ProteinID:CDY29066	ProteinID:CDY29066.1	SEG:seg
SMART:SM00855	SUPFAM:SSF53254	UniParc:UPI0004EEDACF	UniProt:A0A078GU81	MapMan:35.1	:

Description

BnaC07g32720DBnaC07g32720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU81]

Coordinates

chrLK032229:+:425967..427128

Molecular Weight (calculated)

23518.0 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.060

Length

218 amino acids

Sequence
(BLAST)

001: MLSFQCPSPF FFSGQNRTTT SCSTAPPRAS TELTASPSSL ISRRLILLRH AHSSWDHLSL KDHDRPLTKT GQADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: KETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTADHLQ HIISKYSSPD ITTVMCMGHN KGWEEAASML SGASVKLKTC NAALLLAFGN SWDDAFAMAG
201: PGGWKLEGIV APDSTICV

Best Arabidopsis Sequence Match ( AT3G52155.1 )
(BLAST)

001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV

Arabidopsis Description

Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.