Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52155.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G52155.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G181000.1 | Wheat | mitochondrion, plastid | 97.92 | 98.74 |
| TraesCS5B01G174000.1 | Wheat | mitochondrion, plastid | 95.83 | 98.29 |
| HORVU5Hr1G053740.1 | Barley | plastid | 90.83 | 90.46 |
| Os09t0287300-01 | Rice | plastid | 76.25 | 72.62 |
| EER98643 | Sorghum | plastid | 72.92 | 72.31 |
| Zm00001d019980_P001 | Maize | plastid | 71.67 | 71.67 |
| Zm00001d005520_P001 | Maize | plastid | 72.08 | 68.38 |
| KRH11677 | Soybean | plastid | 54.58 | 58.74 |
| KRH36679 | Soybean | plastid | 55.0 | 57.39 |
| AT3G52155.1 | Thale cress | plastid | 50.42 | 55.5 |
| CDX90616 | Canola | plastid | 50.42 | 55.25 |
| CDY29066 | Canola | plastid | 50.0 | 55.05 |
| Bra012818.1-P | Field mustard | plastid | 50.0 | 54.79 |
| VIT_00s0875g00010.t01 | Wine grape | plastid | 52.5 | 53.85 |
| PGSC0003DMT400070128 | Potato | cytosol | 53.33 | 52.03 |
| Solyc04g015330.2.1 | Tomato | plastid | 52.92 | 51.63 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G174800.1 | EnsemblPlantsGene:TraesCS5A01G174800 | Gene3D:3.40.50.1240 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:His_PPase_superfam | InterPro:His_Pase_superF_clade-1 | InterPro:IPR029033 |
| PANTHER:PTHR23029 | PANTHER:PTHR23029:SF49 | PFAM:PF00300 | PFscan:PS51257 | SEG:seg | SMART:SM00855 |
| SUPFAM:SSF53254 | TIGR:cd07067 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:367781909..367784692
Molecular Weight (calculated)
25616.6 Da
IEP (calculated)
7.308
GRAVY (calculated)
-0.083
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRAPPRLLS PPSSATAPHL LLYASSAACR LPPSAAAVAR SVSVSTTTVV DAPAPAAEPG SSDSASATPR RRLILLRHGD SAVGERFTRD HDRPLSKAGR
101: ADAISVSDKF HQMGWIPEHI LCSDATRTKE TLQIMQEHVQ GLSQALVHFI PSFYSIAAMD GQTAEHLQKA ICEYSTDEIL TVMCMGHNKG WEEAASMFSG
201: DSVVLKTCNA ALLEAAGKSW VEAFSQAGLG GWKLHGIVKP
101: ADAISVSDKF HQMGWIPEHI LCSDATRTKE TLQIMQEHVQ GLSQALVHFI PSFYSIAAMD GQTAEHLQKA ICEYSTDEIL TVMCMGHNKG WEEAASMFSG
201: DSVVLKTCNA ALLEAAGKSW VEAFSQAGLG GWKLHGIVKP
001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV
Arabidopsis Description
Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.