Factsheet for VIT_00s0875g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52155.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11677	Soybean	plastid	57.27	60.09
KRH36679	Soybean	plastid	58.12	59.13
AT3G52155.1	Thale cress	plastid	51.28	55.05
PGSC0003DMT400070128	Potato	cytosol	57.69	54.88
Solyc04g015330.2.1	Tomato	plastid	57.69	54.88
TraesCS5B01G174000.1	Wheat	mitochondrion, plastid	54.27	54.27
Zm00001d019980_P001	Maize	plastid	55.56	54.17
EER98643	Sorghum	plastid	55.56	53.72
TraesCS5D01G181000.1	Wheat	mitochondrion, plastid	54.27	53.36
TraesCS5A01G174800.1	Wheat	mitochondrion, plastid	53.85	52.5
CDY29066	Canola	plastid	48.72	52.29
Zm00001d005520_P001	Maize	plastid	56.41	52.17
Bra012818.1-P	Field mustard	plastid	48.72	52.05
CDX90616	Canola	plastid	48.72	52.05
HORVU5Hr1G053740.1	Barley	plastid	52.56	51.04
Os09t0287300-01	Rice	plastid	53.85	50.0

Protein Annotations

EntrezGene:100247110	wikigene:100247110	Gene3D:3.40.50.1240	MapMan:35.1	ProteinID:CBI35724	ProteinID:CBI35724.3
UniProt:D7TYZ8	EMBL:FN596311	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	InterPro:His_PPase_superfam	InterPro:His_Pase_superF_clade-1	InterPro:IPR029033
EntrezGene:LOC100247110	wikigene:LOC100247110	PFAM:PF00300	PANTHER:PTHR23029	PANTHER:PTHR23029:SF49	SMART:SM00855
SUPFAM:SSF53254	TIGR:TC66305	UniParc:UPI0001BE48B6	ArrayExpress:VIT_00s0875g00010	EnsemblPlantsGene:VIT_00s0875g00010	EnsemblPlants:VIT_00s0875g00010.t01
RefSeq:XP_002264671	RefSeq:XP_002264671.2	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:36413247..36416865

Molecular Weight (calculated)

26102.2 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.262

Length

234 amino acids

Sequence
(BLAST)

001: MGVGILQLNS KSTMNAALCN IYPIFKFSET HSQPSRCPSS WIAGRSSNRL PTPRSLVIET VEDQVDGEAR SESVARRLIL LRHAKSSWTD RSLRDHDRPL
101: SKAGRADAIN ISHKLQQLGW IPELILCSDA MRTRETLKIM QEQVRGFSEA EVHFISSFYS IAAMDGQTAE HLQQAICKFS RDEILTVMCM GHNRGWEEAA
201: SMFSGASIEL KTCNAALLEA TGKSWEEVGN LSFL

Best Arabidopsis Sequence Match ( AT3G52155.2 )
(BLAST)

001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEVC

Arabidopsis Description

Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.