Factsheet for Solyc04g015330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52155.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G52155.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070128	Potato	cytosol	95.94	95.94
KRH11677	Soybean	plastid	57.72	63.68
KRH36679	Soybean	plastid	58.13	62.17
AT3G52155.1	Thale cress	plastid	52.85	59.63
VIT_00s0875g00010.t01	Wine grape	plastid	54.88	57.69
CDX90616	Canola	plastid	50.41	56.62
CDY29066	Canola	plastid	50.0	56.42
Bra012818.1-P	Field mustard	plastid	50.0	56.16
TraesCS5B01G174000.1	Wheat	mitochondrion, plastid	52.03	54.7
TraesCS5D01G181000.1	Wheat	mitochondrion, plastid	52.03	53.78
EER98643	Sorghum	plastid	52.44	53.31
TraesCS5A01G174800.1	Wheat	mitochondrion, plastid	51.63	52.92
Zm00001d019980_P001	Maize	plastid	49.59	50.83
Zm00001d005520_P001	Maize	plastid	51.63	50.2
HORVU5Hr1G053740.1	Barley	plastid	48.37	49.38
Os09t0287300-01	Rice	plastid	50.0	48.81

Protein Annotations

Gene3D:3.40.50.1240	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	InterPro:His_PPase_superfam
InterPro:His_Pase_superF_clade-1	InterPro:IPR029033	UniProt:K4BQ36	PFAM:PF00300	PANTHER:PTHR23029	PANTHER:PTHR23029:SF49
SMART:SM00855	SUPFAM:SSF53254	EnsemblPlantsGene:Solyc04g015330.2	EnsemblPlants:Solyc04g015330.2.1	UniParc:UPI00027669DA	SEG:seg

Description

No Description!

Coordinates

chr4:-:5520182..5526092

Molecular Weight (calculated)

26923.2 Da

IEP (calculated)

8.218

GRAVY (calculated)

-0.202

Length

246 amino acids

Sequence
(BLAST)

001: MNVVVASLVE PLQVPYNYNS CKKSQIKKSP KCVMVASSSS GVGSLVIETN QDQQQISTST QTPTTTLSSV AARRLILLRH AKSSWENRSI RDHDRPLSRS
101: GQLDAIKVSQ NLLKLGWIPQ LILSSDALRT RETLKIMQEQ VQAFLEAEVH FISSFYSVAA MDGQTAEHLR QAICNYSRDE ISTVMCMGHN RGWEEAASVL
201: SGATVELKTC NGALLEATGK SWEEAFSLAG PGGWKLQGLV KPDTAV

Best Arabidopsis Sequence Match ( AT3G52155.1 )
(BLAST)

001: MLSLQCLPPF FISVPNRSTN SCSTAPLRAV SDFAASPSTS ISRRLILLRH AHSSWDDLSL RDHDRPLSKT GEADAAKVAQ ILSSLGWLPQ LILSSDATRT
101: RETLKSMQAQ VDGFMEANVH FIPSFYSIAA MDGQTAEHLQ NIISKYSTPD ISTIMCMGHN KGWEEAASML SGASIKLKTC NAALLQAFGN SWEEAFALSG
201: PGGWKLEGLV APDSSIFV

Arabidopsis Description

Uncharacterized protein At3g52155, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94BY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.