CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91449
KRG91803
KRH11677
KRH34983
KRH34984
KRH35367
KRH36679
KRH44917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	KRG91803	AT1G35670.1	19130088
AT1G25550.1	KRH34983	AT1G35670.1	19130088
AT1G25550.1	KRH34984	AT1G35670.1	19130088
AT1G68670.1	KRH44917	AT1G22630.1	21798944
AT1G68670.1	KRG91449	AT2G04630.1	21798944
AT1G68670.1	KRH35367	AT2G04630.1	21798944
AT1G68670.1	KRH11677	AT3G52155.1	21798944
AT1G68670.1	KRH36679	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75476	Soybean	nucleus	88.68	86.81
KRG92028	Soybean	nucleus	61.73	60.1
KRH34759	Soybean	nucleus	61.73	59.79
VIT_01s0011g03110.t01	Wine grape	nucleus	56.06	58.43
PGSC0003DMT400002162	Potato	nucleus	53.37	52.66
Solyc05g009720.2.1	Tomato	nucleus	53.91	50.0
AT1G68670.1	Thale cress	nucleus	46.9	49.15
AT1G25550.1	Thale cress	nucleus	44.74	48.26
CDY54503	Canola	nucleus	47.17	47.55
Bra038360.1-P	Field mustard	nucleus	46.9	47.28
CDY38609	Canola	nucleus	45.82	47.09
Bra004330.1-P	Field mustard	nucleus	45.55	47.08
CDX95998	Canola	nucleus	45.55	47.08
CDX81535	Canola	nucleus	43.4	46.94
CDY20522	Canola	nucleus	40.97	46.06
CDY51129	Canola	nucleus	38.81	45.0
Bra012471.1-P	Field mustard	nucleus	38.54	43.47
GSMUA_Achr10P...	Banana	nucleus	35.85	42.9
GSMUA_Achr6P09870_001	Banana	nucleus	38.27	41.76
GSMUA_Achr3P21090_001	Banana	nucleus	41.24	41.02
GSMUA_Achr8P18270_001	Banana	nucleus	40.43	40.43
GSMUA_Achr11P...	Banana	nucleus	38.27	38.48
GSMUA_Achr1P23220_001	Banana	nucleus	27.22	38.11
Os02t0325600-01	Rice	nucleus	41.51	37.38
TraesCS2D01G119100.1	Wheat	nucleus	38.27	35.32
TraesCS2B01G135600.1	Wheat	nucleus	32.34	34.29
EES15678	Sorghum	nucleus	40.43	32.47
Zm00001d023402_P001	Maize	nucleus	39.62	32.03
Zm00001d023411_P001	Maize	nucleus	39.08	32.01
GSMUA_Achr4P03680_001	Banana	nucleus	25.88	31.17
TraesCS2A01G116100.2	Wheat	plastid	37.74	29.47
KRG89233	Soybean	nucleus	28.57	28.8
GSMUA_Achr4P13650_001	Banana	plastid	12.67	28.48
KRH28514	Soybean	nucleus	25.88	28.07
HORVU2Hr1G020140.3	Barley	nucleus, plastid	38.81	27.85
KRH50234	Soybean	nucleus	30.19	27.18
KRH71185	Soybean	nucleus	30.19	27.05
KRH49770	Soybean	nucleus	26.68	26.98
KRH76947	Soybean	nucleus	26.15	26.43
KRH56661	Soybean	nucleus	32.08	26.21
KRH63037	Soybean	nucleus	32.34	25.97
KRH54846	Soybean	nucleus	32.61	25.91
KRH03776	Soybean	nucleus	31.54	25.89
KRH04674	Soybean	nucleus	25.34	25.75

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100799501	MapMan:15.5.2.3	EMBL:ACUP02000784	EnsemblPlantsGene:GLYMA_02G098800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1JDW0	InterPro:IPR017930	EnsemblPlants:KRH70595
ProteinID:KRH70595	ProteinID:KRH70595.1	EMBL:KT031180	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF4	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000233754B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:9169020..9171899

Molecular Weight (calculated)

40796.7 Da

IEP (calculated)

8.350

GRAVY (calculated)

-0.788

Length

371 amino acids

Sequence
(BLAST)

001: MQFAEKMQPL KMGFREYIEA LEEERKKIQV FPKELPLSLE LVTQAIEACR QQLCGTVAEY NLNAQSECSE QTSTDGPVFE EFIIPIKKKA SQASVEEDDD
101: EEHSHKHTKT TTDKKKSDWL RSVQLWNPNP PPTKEDVVPR KTNVVEVKRN GGGAFQPFQR EEKSGVSKAN NNNEASAIGK APSSPPVPAT SYTGPVRVDS
201: KKEEKGDAQR KQRRCWSQEL HKRFLHALQQ LGGADSATPK QIRELMKVDG LTNDEVKSHL QKFRLHTRRS PIIHNSASSQ AGSLFLVGNI FVQPPEYATS
301: SASGGELTTA TPAAPTGIYA PVAAHLPAGT HTSPIMKHSH SPSEEKNNHS VHSNSPASSS STHTITTSPP A

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.