CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49770	Soybean	nucleus	90.22	90.46
KRH50234	Soybean	nucleus	57.88	51.7
VIT_03s0063g01060.t01	Wine grape	nucleus	55.71	51.12
KRH71185	Soybean	nucleus	57.07	50.72
Solyc01g108300.2.1	Tomato	nucleus	51.9	47.16
PGSC0003DMT400066352	Potato	nucleus	51.36	47.01
GSMUA_Achr7P00660_001	Banana	nucleus	36.96	40.12
GSMUA_Achr4P28210_001	Banana	nucleus	35.05	40.06
KRH28514	Soybean	nucleus	36.96	39.77
CDY51048	Canola	nucleus	32.34	39.53
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	35.6	39.22
Bra018794.1-P	Field mustard	nucleus	32.07	39.07
GSMUA_Achr10P...	Banana	nucleus	40.49	38.4
CDY59732	Canola	nucleus	26.63	38.28
Bra040662.1-P	Field mustard	nucleus	33.7	38.04
TraesCS5A01G401600.1	Wheat	nucleus	34.51	38.02
KRH76947	Soybean	nucleus	37.5	37.6
CDY71327	Canola	nucleus	33.97	37.43
GSMUA_Achr6P34680_001	Banana	nucleus	38.32	37.2
Zm00001d007962_P001	Maize	extracellular, nucleus	34.78	37.1
TraesCS5B01G406300.2	Wheat	nucleus	33.42	36.83
GSMUA_Achr9P26570_001	Banana	nucleus	38.86	36.48
GSMUA_Achr4P23210_001	Banana	nucleus	36.68	36.29
KRH04674	Soybean	nucleus	35.6	35.89
GSMUA_Achr4P32500_001	Banana	nucleus	33.15	35.88
KXG37487	Sorghum	nucleus	33.15	35.67
GSMUA_Achr6P00650_001	Banana	nucleus	36.68	35.62
TraesCS2A01G264800.1	Wheat	nucleus	34.24	35.49
TraesCS2D01G259200.2	Wheat	nucleus	34.24	35.39
Os07t0119300-01	Rice	nucleus	33.97	35.21
Zm00001d034160_P001	Maize	nucleus	32.34	35.21
AT1G49560.1	Thale cress	nucleus	31.79	35.14
Zm00001d013202_P001	Maize	nucleus	34.24	34.81
Zm00001d018698_P001	Maize	nucleus	34.78	34.69
GSMUA_Achr10P...	Banana	nucleus	36.68	34.53
Os03t0764600-01	Rice	nucleus	32.61	34.48
EER95793	Sorghum	nucleus	35.6	33.33
GSMUA_Achr2P13380_001	Banana	nucleus	32.88	33.06
HORVU5Hr1G018220.2	Barley	nucleus	33.7	32.8
TraesCS5D01G081000.1	Wheat	nucleus	33.15	32.53
TraesCS5A01G068900.2	Wheat	nucleus	33.15	32.28
TraesCS5B01G075300.1	Wheat	nucleus	32.88	32.1
Os12t0586300-00	Rice	extracellular	34.24	31.9
Zm00001d030891_P001	Maize	nucleus	31.52	31.69
TraesCS2B01G277300.1	Wheat	nucleus	34.51	31.59
TraesCS5D01G411800.1	Wheat	plastid	33.15	30.96
OQU79454	Sorghum	nucleus	32.88	29.73
CDY29342	Canola	cytosol, mitochondrion, nucleus	16.3	29.7
Os03t0241001-00	Rice	plastid	11.41	29.17
HORVU2Hr1G062670.3	Barley	plastid	34.24	29.1
KRH70595	Soybean	nucleus	28.8	28.57
KRH34759	Soybean	nucleus	29.62	28.46
HORVU2Hr1G006350.1	Barley	plastid	10.33	28.36
KRH75476	Soybean	nucleus	28.8	27.97
HORVU6Hr1G034270.1	Barley	plastid	10.05	27.61
KRG92028	Soybean	nucleus	28.53	27.56
KRH56661	Soybean	nucleus	33.97	27.53
KRH03776	Soybean	nucleus	33.7	27.43
KRH63037	Soybean	nucleus	33.97	27.06
KRH54846	Soybean	nucleus	33.97	26.77
HORVU5Hr1G097560.4	Barley	nucleus, plastid	27.99	22.59
HORVU4Hr1G032990.1	Barley	cytosol	2.45	14.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100809323	MapMan:15.5.2.3	EMBL:ACUP02012192	EnsemblPlantsGene:GLYMA_20G009800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1ND35	InterPro:IPR017930	EnsemblPlants:KRG89233
ProteinID:KRG89233	ProteinID:KRG89233.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF7	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000233D9A0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:853621..856124

Molecular Weight (calculated)

41307.7 Da

IEP (calculated)

7.674

GRAVY (calculated)

-0.743

Length

368 amino acids

Sequence
(BLAST)

001: MGLVVPEEEL SLDLRPSFVP KTITDFLCHL STTPNASHKV SLLDDFVHRL ELELAKIQAF KRELPLCMFL LNDAISALKV ESEKCRACKS EPVFEEFIPL
101: KKECDQRKEI EKEKECRDKK NWMSSFQLWN NDDKADNNNN AYECDKKHNY RVENKNNGEK RKSVTKDLFQ YGRIRNGEKG FVIPFSSYPA TKEEKEDCVA
201: NGLSLQTPGT AVKSTREGSG CRTSSCRVGS SAPSPLHQPQ SSRKQRRCWS PELHSRFIKA LEVLGGSQAA TPKQIRELMR VDGLTNDEVK SHLQKYRLHT
301: QRVPVATAAN FSRSAVDLGG LWMHNESLKG GSSGSPQGPL QLATQSGEAT SQTEGDNMID DDDVKSDL

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.