Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51048 | Canola | nucleus | 81.44 | 90.37 |
| CDY59732 | Canola | nucleus | 54.19 | 70.7 |
| AT1G49560.1 | Thale cress | nucleus | 67.07 | 67.27 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 35.63 | 58.91 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 43.41 | 36.16 |
| KRG89233 | Soybean | nucleus | 37.43 | 33.97 |
| KRH71185 | Soybean | nucleus | 41.02 | 33.09 |
| Solyc01g108300.2.1 | Tomato | nucleus | 40.12 | 33.09 |
| PGSC0003DMT400066352 | Potato | nucleus | 39.82 | 33.08 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 32.93 | 32.93 |
| KXG37487 | Sorghum | nucleus | 33.53 | 32.75 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 33.23 | 32.74 |
| KRH49770 | Soybean | nucleus | 35.93 | 32.7 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 32.63 | 32.63 |
| Os03t0764600-01 | Rice | nucleus | 33.83 | 32.47 |
| KRH50234 | Soybean | nucleus | 39.82 | 32.28 |
| Zm00001d034160_P001 | Maize | nucleus | 32.34 | 31.95 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 35.93 | 31.66 |
| CDY40421 | Canola | nucleus | 15.27 | 31.29 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 32.04 | 31.01 |
| GSMUA_Achr10P... | Banana | nucleus | 35.93 | 30.93 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 30.84 | 30.84 |
| CDX69259 | Canola | nucleus | 29.64 | 30.75 |
| HORVU2Hr1G006350.1 | Barley | plastid | 12.28 | 30.6 |
| Zm00001d013202_P001 | Maize | nucleus | 32.93 | 30.39 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 33.23 | 30.33 |
| Os07t0119300-01 | Rice | nucleus | 32.04 | 30.14 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 32.04 | 30.14 |
| CDY44057 | Canola | nucleus | 28.74 | 29.91 |
| HORVU6Hr1G034270.1 | Barley | plastid | 11.98 | 29.85 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 33.83 | 29.82 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 28.74 | 29.81 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 32.93 | 29.57 |
| CDX75610 | Canola | nucleus | 28.74 | 29.54 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 31.44 | 29.49 |
| GSMUA_Achr10P... | Banana | nucleus | 34.43 | 29.41 |
| Zm00001d018698_P001 | Maize | nucleus | 32.34 | 29.27 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 34.13 | 29.08 |
| CDY72117 | Canola | nucleus | 15.87 | 28.96 |
| CDY42715 | Canola | nucleus | 25.45 | 28.91 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 29.34 | 28.82 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 32.34 | 28.8 |
| EER95793 | Sorghum | nucleus | 33.53 | 28.5 |
| Os03t0241001-00 | Rice | plastid | 12.28 | 28.47 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 32.04 | 28.38 |
| Os12t0586300-00 | Rice | extracellular | 33.53 | 28.35 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 32.04 | 28.31 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 32.04 | 28.31 |
| TraesCS5D01G411800.1 | Wheat | plastid | 32.63 | 27.66 |
| CDX69206 | Canola | nucleus | 12.57 | 26.92 |
| Zm00001d030891_P001 | Maize | nucleus | 29.34 | 26.78 |
| CDY04180 | Canola | nucleus | 26.95 | 26.71 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 31.74 | 26.37 |
| CDX83554 | Canola | nucleus | 27.84 | 26.27 |
| CDX81535 | Canola | nucleus | 26.65 | 25.95 |
| CDY13584 | Canola | nucleus | 27.25 | 25.49 |
| CDY39188 | Canola | nucleus | 26.35 | 25.29 |
| OQU79454 | Sorghum | nucleus | 30.54 | 25.06 |
| CDX97993 | Canola | nucleus | 25.75 | 24.93 |
| CDX95998 | Canola | nucleus | 26.65 | 24.79 |
| HORVU2Hr1G062670.3 | Barley | plastid | 32.04 | 24.71 |
| CDY19382 | Canola | nucleus | 25.15 | 24.71 |
| CDY51129 | Canola | nucleus | 23.65 | 24.69 |
| CDY21091 | Canola | nucleus | 25.45 | 24.57 |
| CDY50179 | Canola | nucleus | 25.45 | 24.57 |
| CDY54503 | Canola | nucleus | 26.95 | 24.46 |
| CDY20522 | Canola | nucleus | 23.95 | 24.24 |
| CDY38609 | Canola | nucleus | 26.05 | 24.1 |
| CDY16075 | Canola | nucleus | 25.15 | 24.07 |
| CDY22459 | Canola | nucleus | 28.14 | 23.1 |
| CDY02988 | Canola | nucleus | 29.04 | 22.93 |
| CDY51214 | Canola | nucleus | 28.74 | 22.7 |
| CDY70722 | Canola | nucleus | 20.36 | 22.15 |
| CDY71874 | Canola | nucleus | 22.75 | 21.05 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 28.44 | 20.83 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.1 | 11.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078K0B0 | UniProt:A0A078K0B0 | EnsemblPlants:CDY71327 | ProteinID:CDY71327 |
| ProteinID:CDY71327.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00014182001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF7 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE1A84 | SEG:seg |
Description
BnaCnng72430DBnaCnng72430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0B0]
Coordinates
chrLK045398:-:171..1941
Molecular Weight (calculated)
37455.9 Da
IEP (calculated)
5.346
GRAVY (calculated)
-0.896
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGDELSL GSRRHCSMPT TIYGFPTNPS KITNVKKLEE EKMKIQGSDL ELPLCLQILN DAISCLKEES KRCSEMDTQP LSKDFISGDG PLLKREEKKL
101: LQLWREDDHI SNGRFSDTNN KLDDIEINEE KPSNGLSMLL KTPEVETGLG LGLASSSMFN GGRRKETASC GFTSNVSVPQ PPPYLQQQEL SRKQRRCWTP
201: ELHRRFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS HLQKYRLHIR KSNSNPEKQS VLVLGFNLWN SSSKEEEEET GEGRESSKRN NSQSDSPQGP
301: LHLPCTTTTT TTGGDSCMED AEDAKSESFQ IWRD
101: LQLWREDDHI SNGRFSDTNN KLDDIEINEE KPSNGLSMLL KTPEVETGLG LGLASSSMFN GGRRKETASC GFTSNVSVPQ PPPYLQQQEL SRKQRRCWTP
201: ELHRRFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS HLQKYRLHIR KSNSNPEKQS VLVLGFNLWN SSSKEEEEET GEGRESSKRN NSQSDSPQGP
301: LHLPCTTTTT TTGGDSCMED AEDAKSESFQ IWRD
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.