Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025161.1-P | Field mustard | nucleus | 94.35 | 88.36 |
| CDY13584 | Canola | nucleus | 88.98 | 88.24 |
| CDY04180 | Canola | nucleus | 75.14 | 78.93 |
| CDY39188 | Canola | nucleus | 74.01 | 75.29 |
| AT3G25790.1 | Thale cress | nucleus | 74.58 | 73.95 |
| CDY50179 | Canola | nucleus | 58.76 | 60.12 |
| CDX97993 | Canola | nucleus | 58.19 | 59.71 |
| CDY19382 | Canola | nucleus | 57.06 | 59.41 |
| CDY16075 | Canola | nucleus | 58.47 | 59.31 |
| CDY21091 | Canola | nucleus | 57.63 | 58.96 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 47.46 | 47.19 |
| CDX81535 | Canola | nucleus | 45.2 | 46.65 |
| PGSC0003DMT400002162 | Potato | nucleus | 49.15 | 46.28 |
| CDY54503 | Canola | nucleus | 47.74 | 45.92 |
| CDY20522 | Canola | nucleus | 42.09 | 45.15 |
| CDX95998 | Canola | nucleus | 45.76 | 45.13 |
| CDY51129 | Canola | nucleus | 40.68 | 45.0 |
| CDY38609 | Canola | nucleus | 45.48 | 44.6 |
| Solyc05g009720.2.1 | Tomato | nucleus | 49.44 | 43.75 |
| GSMUA_Achr10P... | Banana | nucleus | 34.75 | 39.68 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 37.29 | 38.82 |
| GSMUA_Achr11P... | Banana | nucleus | 40.4 | 38.75 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 38.14 | 36.39 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 27.12 | 36.23 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 38.14 | 36.19 |
| Os02t0325600-01 | Rice | nucleus | 40.96 | 35.19 |
| CDY59732 | Canola | nucleus | 25.42 | 35.16 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 39.27 | 34.58 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 32.49 | 32.86 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 27.97 | 32.14 |
| CDY40421 | Canola | nucleus | 14.69 | 31.9 |
| EES15678 | Sorghum | nucleus | 39.27 | 30.09 |
| CDY42715 | Canola | nucleus | 24.86 | 29.93 |
| CDX75610 | Canola | nucleus | 27.4 | 29.85 |
| CDX69259 | Canola | nucleus | 27.12 | 29.81 |
| CDY44057 | Canola | nucleus | 26.84 | 29.59 |
| CDY72117 | Canola | nucleus | 15.25 | 29.51 |
| TraesCS2A01G116100.2 | Wheat | plastid | 38.98 | 29.05 |
| CDY51048 | Canola | nucleus | 24.58 | 28.9 |
| Zm00001d023402_P001 | Maize | nucleus | 37.29 | 28.76 |
| Zm00001d023411_P001 | Maize | nucleus | 36.72 | 28.7 |
| CDY71327 | Canola | nucleus | 26.27 | 27.84 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.71 | 27.27 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 39.27 | 26.89 |
| CDY70722 | Canola | nucleus | 22.32 | 25.73 |
| CDY51214 | Canola | nucleus | 30.23 | 25.3 |
| CDY02988 | Canola | nucleus | 30.23 | 25.3 |
| CDY71874 | Canola | nucleus | 25.14 | 24.65 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 13.56 | 23.76 |
| CDX69206 | Canola | nucleus | 10.45 | 23.72 |
| CDY22459 | Canola | nucleus | 25.99 | 22.6 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078D5G7 | EnsemblPlants:CDX83554 | ProteinID:CDX83554 | ProteinID:CDX83554.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00139188001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE8874 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g22940D
Coordinates
chrLK031833:+:545008..548205
Molecular Weight (calculated)
40386.4 Da
IEP (calculated)
7.073
GRAVY (calculated)
-0.903
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSLSNMMK YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTRAI EAYKKEISGT TTDTLYGQPE CSEQTTGECG PVLDLFLPVK QSSASTDEEE
101: EEVYEDDDVE HESHDTGIDF VDKNMKSEWL KSVQLWNQPE AVPVSKSERS QQETQTVVEP IKENDNGAGS HQPPCYEMSN EKNDYIISLA TTRQRKQRRC
201: WSHELHRRFL NALKQLGGPH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSQTIP NNRDSQTQHF VVVGGIWVPQ ANHSKANAVA SRKTTTGIYG
301: PMVSPLPSEW PSHSNFGREI SEERSRCSNK GIVRCSSPAM SSSTRTKTKN SKLS
101: EEVYEDDDVE HESHDTGIDF VDKNMKSEWL KSVQLWNQPE AVPVSKSERS QQETQTVVEP IKENDNGAGS HQPPCYEMSN EKNDYIISLA TTRQRKQRRC
201: WSHELHRRFL NALKQLGGPH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSQTIP NNRDSQTQHF VVVGGIWVPQ ANHSKANAVA SRKTTTGIYG
301: PMVSPLPSEW PSHSNFGREI SEERSRCSNK GIVRCSSPAM SSSTRTKTKN SKLS
001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
Arabidopsis Description
HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.