Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g009720.2.1 | Tomato | nucleus | 92.82 | 87.25 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 62.5 | 66.01 |
| KRH75476 | Soybean | nucleus | 53.99 | 53.56 |
| KRH70595 | Soybean | nucleus | 52.66 | 53.37 |
| KRG92028 | Soybean | nucleus | 53.46 | 52.76 |
| KRH34759 | Soybean | nucleus | 53.72 | 52.74 |
| AT1G68670.1 | Thale cress | nucleus | 48.14 | 51.13 |
| AT1G25550.1 | Thale cress | nucleus | 46.54 | 50.87 |
| CDX95998 | Canola | nucleus | 48.14 | 50.42 |
| Bra004330.1-P | Field mustard | nucleus | 47.87 | 50.14 |
| CDY38609 | Canola | nucleus | 47.87 | 49.86 |
| CDX81535 | Canola | nucleus | 45.48 | 49.85 |
| CDY54503 | Canola | nucleus | 48.14 | 49.18 |
| Bra038360.1-P | Field mustard | nucleus | 48.14 | 49.18 |
| CDX83554 | Canola | nucleus | 46.28 | 49.15 |
| CDY13584 | Canola | nucleus | 46.01 | 48.46 |
| GSMUA_Achr10P... | Banana | nucleus | 39.63 | 48.06 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 43.35 | 47.94 |
| CDY19382 | Canola | nucleus | 42.55 | 47.06 |
| CDY16075 | Canola | nucleus | 43.62 | 46.99 |
| CDY04180 | Canola | nucleus | 42.02 | 46.88 |
| Bra025161.1-P | Field mustard | nucleus | 47.07 | 46.83 |
| CDY50179 | Canola | nucleus | 43.09 | 46.82 |
| AT1G13300.1 | Thale cress | nucleus | 42.82 | 46.8 |
| AT3G25790.1 | Thale cress | nucleus | 44.15 | 46.5 |
| CDY39188 | Canola | nucleus | 42.82 | 46.26 |
| Bra016734.1-P | Field mustard | nucleus | 42.55 | 46.24 |
| CDY21091 | Canola | nucleus | 42.55 | 46.24 |
| CDX97993 | Canola | nucleus | 42.29 | 46.09 |
| CDY51129 | Canola | nucleus | 39.1 | 45.94 |
| CDY20522 | Canola | nucleus | 40.16 | 45.76 |
| GSMUA_Achr11P... | Banana | nucleus | 44.15 | 44.99 |
| Bra017349.1-P | Field mustard | nucleus | 42.82 | 44.97 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 44.15 | 44.74 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 43.88 | 44.24 |
| Bra019824.1-P | Field mustard | nucleus | 42.55 | 43.84 |
| Bra012471.1-P | Field mustard | nucleus | 37.77 | 43.16 |
| Os02t0325600-01 | Rice | nucleus | 46.54 | 42.48 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 45.21 | 42.29 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 39.36 | 42.29 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.72 | 40.75 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 30.32 | 37.01 |
| EES15678 | Sorghum | nucleus | 45.21 | 36.8 |
| Zm00001d023402_P001 | Maize | nucleus | 43.35 | 35.51 |
| Zm00001d023411_P001 | Maize | nucleus | 42.55 | 35.32 |
| TraesCS2A01G116100.2 | Wheat | plastid | 44.41 | 35.16 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 45.21 | 32.88 |
| PGSC0003DMT400066352 | Potato | nucleus | 32.18 | 30.1 |
| PGSC0003DMT400026096 | Potato | nucleus | 28.46 | 29.32 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.77 | 29.09 |
| PGSC0003DMT400078136 | Potato | nucleus | 33.78 | 28.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0045892 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0ZJR2 | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| PFAM:PF00249 | EnsemblPlantsGene:PGSC0003DMG400000828 | PGSC:PGSC0003DMG400000828 | EnsemblPlants:PGSC0003DMT400002162 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002969D59 | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000828]
Coordinates
chr5:-:2094104..2097092
Molecular Weight (calculated)
41316.4 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.886
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MERCQQYIDA LEQERTKIQV FSRELPLCLE LVTQAIETYK QQLSGTTTEY NLNAQSTECS DDEHTSSDVP VLEEFIPLKS TFSHEDEDED EEEDDEENQS
101: HKSKSLIINN NNTSNSTSSK DTKNKKSDWL RSVQLWNQTS DPTPKEELTP KKVSVVEVKK NGSGGAFHPF KKEKNAVATV ETTPISGVVL AATDSSTVEN
201: GGGNKKEDKD GQRKQRRCWS PELHRRFLHA LQQLGGSHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSPSSIHN NNQQPTQFVV VGGIWVPPPE
301: YAAMAAAAPA ASGEASGVAN SNGIYAPIAT HPKGPLHDHA SEERDAPPSH SDCGGVHSNS PATSSSTHTT TASPAY
101: HKSKSLIINN NNTSNSTSSK DTKNKKSDWL RSVQLWNQTS DPTPKEELTP KKVSVVEVKK NGSGGAFHPF KKEKNAVATV ETTPISGVVL AATDSSTVEN
201: GGGNKKEDKD GQRKQRRCWS PELHRRFLHA LQQLGGSHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSPSSIHN NNQQPTQFVV VGGIWVPPPE
301: YAAMAAAAPA ASGEASGVAN SNGIYAPIAT HPKGPLHDHA SEERDAPPSH SDCGGVHSNS PATSSSTHTT TASPAY
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Arabidopsis Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.