Factsheet for PGSC0003DMT400024006

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043086
PGSC0003DMT400061842
PGSC0003DMT400063189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22630.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT1G22630.1	PGSC0003DMT400043086	AT4G22250.1	21798944
AT1G22630.1	PGSC0003DMT400061842	AT4G22250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0105800-01	Rice	cytosol	37.27	93.18
KRH44917	Soybean	plastid	62.73	63.89
AT1G22630.1	Thale cress	cytosol	60.0	60.0
GSMUA_Achr8P29370_001	Banana	plastid	57.27	60.0
CDY41474	Canola	plastid	60.91	55.83
TraesCS1A01G015100.1	Wheat	plastid	50.91	50.91
TraesCS1B01G019300.1	Wheat	plastid	50.91	50.91
EES17536	Sorghum	plastid	56.36	50.41
CDX91686	Canola	plastid	60.91	50.38
Zm00001d011093_P001	Maize	plastid	52.73	48.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400024006	EnsemblPlantsGene:PGSC0003DMG400009285	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	PANTHER:PTHR15852	PANTHER:PTHR15852:SF18	PGSC:PGSC0003DMG400009285	SEG:seg
UniParc:UPI0002957F59	UniProt:M1AJA5	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009285]

Coordinates

chr11:-:14501898..14503581

Molecular Weight (calculated)

11681.1 Da

IEP (calculated)

8.959

GRAVY (calculated)

-0.370

Length

110 amino acids

Sequence
(BLAST)

001: MANVSICCCF ANSSITPTIS QFNTVNLRGQ RFITSAAKSG GFSLKSIGNR CEGCEGKGAI ECPGCKGTGK NKKNGNIFER WKCFDCQGFG LKSCPVCGKG
101: GLTPEQRGER

Best Arabidopsis Sequence Match ( AT1G22630.1 )
(BLAST)

001: MLKFPLCCSE LSLEPKILAF ESQLVSGRRD TIKVSAGKIG NFSLGSIFKS CETCGAKGAI ECPGCKGTGK NKKNGNMFER WKCFDCQGFG MKSCPKCGKG
101: GLTPEQRGER

Arabidopsis Description

At1g22630/F12K8_2 [Source:UniProtKB/TrEMBL;Acc:Q9SKA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.