Factsheet for GSMUA_Achr8P29370_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P18240_001
GSMUA_Achr3P12970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22630.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT1G22630.1	GSMUA_Achr1P18240_001	AT4G22250.1	21798944
AT1G22630.1	GSMUA_Achr3P12970_001	AT4G22250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0105800-01	Rice	cytosol	40.0	95.45
KRH44917	Soybean	plastid	64.76	62.96
AT1G22630.1	Thale cress	cytosol	60.0	57.27
PGSC0003DMT400024006	Potato	plastid	60.0	57.27
TraesCS1A01G015100.1	Wheat	plastid	57.14	54.55
Zm00001d011093_P001	Maize	plastid	60.95	53.78
TraesCS1B01G019300.1	Wheat	plastid	56.19	53.64
CDY41474	Canola	plastid	58.1	50.83
EES17536	Sorghum	plastid	57.14	48.78
CDX91686	Canola	plastid	58.1	45.86

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29370_001	EnsemblPlants:GSMUA_Achr8T29370_001	EnsemblPlantsGene:GSMUA_Achr8G29370_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF18
SEG:seg	SUPFAM:SSF57938	UniParc:UPI000296D083	UniProt:M0TUP0	MapMan:35.2	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G29370_001]

Coordinates

chr8:+:31777666..31778921

Molecular Weight (calculated)

11181.5 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.755

Length

105 amino acids

Sequence
(BLAST)

001: MEIATVPSLR SHPQPCPHPW QTRAKRSGVS ASKYGAVSVK PVSKGCQKCG GKGAIECPGC KGTGKNKKNG NIFERWKCFD CQGFGLKSCP SCGKGGLTPE
101: QRGER

Best Arabidopsis Sequence Match ( AT1G22630.1 )
(BLAST)

001: MLKFPLCCSE LSLEPKILAF ESQLVSGRRD TIKVSAGKIG NFSLGSIFKS CETCGAKGAI ECPGCKGTGK NKKNGNMFER WKCFDCQGFG MKSCPKCGKG
101: GLTPEQRGER

Arabidopsis Description

At1g22630/F12K8_2 [Source:UniProtKB/TrEMBL;Acc:Q9SKA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.