Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017475_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22630.1 | Zm00001d017475_P002 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0105800-01 | Rice | cytosol | 34.45 | 93.18 |
| EES17536 | Sorghum | plastid | 71.43 | 69.11 |
| GSMUA_Achr8P29370_001 | Banana | plastid | 53.78 | 60.95 |
| KRH44917 | Soybean | plastid | 51.26 | 56.48 |
| TraesCS1A01G015100.1 | Wheat | plastid | 52.1 | 56.36 |
| TraesCS1B01G019300.1 | Wheat | plastid | 51.26 | 55.45 |
| AT1G22630.1 | Thale cress | cytosol | 48.74 | 52.73 |
| PGSC0003DMT400024006 | Potato | plastid | 48.74 | 52.73 |
| CDY41474 | Canola | plastid | 49.58 | 49.17 |
| CDX91686 | Canola | plastid | 49.58 | 44.36 |
Protein Annotations
| EMBL:EU971956 | EnsemblPlants:Zm00001d011093_P001 | EnsemblPlants:Zm00001d011093_T001 | EnsemblPlantsGene:Zm00001d011093 | EntrezGene:100278105 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:HSP_DnaJ_Cys-rich_dom_sf |
| PANTHER:PTHR15852 | PANTHER:PTHR15852:SF18 | ProteinID:AQK95677.1 | SEG:seg | SUPFAM:SSF57938 | UniParc:UPI000182EF50 |
| UniProt:B6U3Z1 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:138778868..138779863
Molecular Weight (calculated)
12401.0 Da
IEP (calculated)
10.988
GRAVY (calculated)
-0.482
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVAMATTTS SSLVTGLRCR TGAAVALIRP TSAAGDRRGW RTTASGRGAR RGKVTVAAAC KTCKGKGAVE CPGCKGTGKN KKNGNIFERW KCFDCQGFGL
101: KSCPTCGKGG LTPEQRGER
101: KSCPTCGKGG LTPEQRGER
001: MLKFPLCCSE LSLEPKILAF ESQLVSGRRD TIKVSAGKIG NFSLGSIFKS CETCGAKGAI ECPGCKGTGK NKKNGNMFER WKCFDCQGFG MKSCPKCGKG
101: GLTPEQRGER
101: GLTPEQRGER
Arabidopsis Description
At1g22630/F12K8_2 [Source:UniProtKB/TrEMBL;Acc:Q9SKA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.