Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G251400.1 | |
| TraesCS6B01G273900.1 | |
| TraesCS6D01G233200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22630.1 | TraesCS6A01G251400.1 | AT3G48150.1 | 21798944 |
| AT1G22630.1 | TraesCS6B01G273900.1 | AT3G48150.1 | 21798944 |
| AT1G22630.1 | TraesCS6D01G233200.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G015100.1 | Wheat | plastid | 96.36 | 96.36 |
| Os05t0105800-01 | Rice | cytosol | 35.45 | 88.64 |
| GSMUA_Achr8P29370_001 | Banana | plastid | 53.64 | 56.19 |
| Zm00001d011093_P001 | Maize | plastid | 55.45 | 51.26 |
| KRH44917 | Soybean | plastid | 50.0 | 50.93 |
| PGSC0003DMT400024006 | Potato | plastid | 50.91 | 50.91 |
| EES17536 | Sorghum | plastid | 55.45 | 49.59 |
| AT1G22630.1 | Thale cress | cytosol | 47.27 | 47.27 |
| CDY41474 | Canola | plastid | 49.09 | 45.0 |
| CDX91686 | Canola | plastid | 50.0 | 41.35 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G019300.1 | EnsemblPlantsGene:TraesCS1B01G019300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | PANTHER:PTHR15852 | PANTHER:PTHR15852:SF18 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:+:9081292..9082140
Molecular Weight (calculated)
11696.2 Da
IEP (calculated)
10.387
GRAVY (calculated)
-0.585
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPASASLVS LRASAATSHS CFSCRQRATP KTRMLPAMAS KSGAKLVASG CKTCRGKGAV ECEGCKGTGR NKKNGNIFER WKCFDCQGFG MRKCPTCGKG
101: GLTPEQRGER
101: GLTPEQRGER
001: MLKFPLCCSE LSLEPKILAF ESQLVSGRRD TIKVSAGKIG NFSLGSIFKS CETCGAKGAI ECPGCKGTGK NKKNGNMFER WKCFDCQGFG MKSCPKCGKG
101: GLTPEQRGER
101: GLTPEQRGER
Arabidopsis Description
At1g22630/F12K8_2 [Source:UniProtKB/TrEMBL;Acc:Q9SKA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.