Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G273900.1 | Wheat | cytosol | 98.0 | 98.0 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 98.0 | 98.0 |
| Os02t0656300-01 | Rice | cytosol | 91.15 | 91.46 |
| Zm00001d017475_P002 | Maize | cytosol | 90.48 | 90.48 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 97.16 | 89.68 |
| EES07517 | Sorghum | cytosol | 89.48 | 89.33 |
| HORVU0Hr1G027080.4 | Barley | plastid | 86.31 | 86.17 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 68.61 | 71.23 |
| GSMUA_Achr11P... | Banana | cytosol | 71.62 | 71.03 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 67.61 | 70.19 |
| KRH27971 | Soybean | nucleus | 65.94 | 68.46 |
| KRH77487 | Soybean | nucleus | 65.94 | 68.34 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 65.61 | 68.23 |
| Os06t0679100-00 | Rice | plastid | 20.2 | 67.98 |
| PGSC0003DMT400063189 | Potato | cytosol | 61.6 | 67.83 |
| Bra033769.1-P | Field mustard | nucleus | 63.61 | 65.92 |
| AT3G48150.1 | Thale cress | cytosol | 63.61 | 65.8 |
| Bra018081.1-P | Field mustard | cytosol | 62.6 | 64.77 |
| KRH24006 | Soybean | cytosol | 63.44 | 64.52 |
| CDY58070 | Canola | cytosol | 52.09 | 63.03 |
| CDY70805 | Canola | nucleus | 31.05 | 61.79 |
| CDY44976 | Canola | cytosol | 51.75 | 61.39 |
| CDY36901 | Canola | cytosol | 50.75 | 60.68 |
| CDY58069 | Canola | nucleus | 42.4 | 56.95 |
| KRH29310 | Soybean | cytosol | 26.04 | 48.75 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 20.03 | 15.83 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.4 | InterPro:APC8 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 |
| GO:GO:0006950 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 |
| GO:GO:0031347 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF04049 | PFAM:PF13176 |
| PFAM:PF13181 | PFAM:PF13414 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 |
| SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | EnsemblPlantsGene:TraesCS6D01G233200 |
| EnsemblPlants:TraesCS6D01G233200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:327206533..327209733
Molecular Weight (calculated)
68204.4 Da
IEP (calculated)
6.820
GRAVY (calculated)
-0.364
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAKENYRV ELRAAARQLG DRCLYSAAKW AAELLVGIEP DATPSQSAAM DTPSSSGAAP GGRLLHLHRS GGSSFRRRMR PGGGAGSEAG TPLGGVSYVS
101: TPIPDDDAFD AGADKYLLAK TYFDCREYRR AAHVLRSQVG RKAVFLRCYA LYMAGEKRKE EETIELEGSL GKSNVVNQEL VALERELSTH RRTGAIDSFG
201: LYLYGIVLRD KGCEGLSRTV LVESVNSYPW NWCAWLEIQS LCTSSDILNN LNLKNHWMKD FFIASAHLEL KMHEEALKRY ERLMGVFRCS DYIQAQIATV
301: QYSMRDLDEA DMIFEELLRT DPFRVDSMDI YSNLLYAKES LTALSFLAHR VFLTDKYRPE SCCIIANYYS LKGQHEKSVL YFQRALKLNR KYLSAWTLMG
401: HEFVELKNTP AAIDAYRRAV DINPRDYRAW YGLGQIYEMM GMPFYALYYF RKSSHLQPND ARLWIAMAQC YESDPLQMIE EAIKCYERAA NTNDTEGIAL
501: HQLAKLHSML GQAEEAAFYY KKDLDRMEVE ERQGQNFVEA LLFLAKHCKS MGRFEEAEHY CTRLLDYTGP EKETAKSILQ GLKRAQSGFP PMDIDHFAL
101: TPIPDDDAFD AGADKYLLAK TYFDCREYRR AAHVLRSQVG RKAVFLRCYA LYMAGEKRKE EETIELEGSL GKSNVVNQEL VALERELSTH RRTGAIDSFG
201: LYLYGIVLRD KGCEGLSRTV LVESVNSYPW NWCAWLEIQS LCTSSDILNN LNLKNHWMKD FFIASAHLEL KMHEEALKRY ERLMGVFRCS DYIQAQIATV
301: QYSMRDLDEA DMIFEELLRT DPFRVDSMDI YSNLLYAKES LTALSFLAHR VFLTDKYRPE SCCIIANYYS LKGQHEKSVL YFQRALKLNR KYLSAWTLMG
401: HEFVELKNTP AAIDAYRRAV DINPRDYRAW YGLGQIYEMM GMPFYALYYF RKSSHLQPND ARLWIAMAQC YESDPLQMIE EAIKCYERAA NTNDTEGIAL
501: HQLAKLHSML GQAEEAAFYY KKDLDRMEVE ERQGQNFVEA LLFLAKHCKS MGRFEEAEHY CTRLLDYTGP EKETAKSILQ GLKRAQSGFP PMDIDHFAL
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.