Factsheet for TraesCS6D01G195300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G242700.1	Wheat	cytosol	97.97	97.97
TraesCS6A01G212300.1	Wheat	cytosol	98.48	96.77
Zm00001d017117_P001	Maize	plasma membrane	90.38	91.77
OQU85258	Sorghum	cytosol	90.13	91.52
TraesCS2D01G341500.1	Wheat	golgi, unclear	88.86	90.46
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	96.2	90.26
GSMUA_Achr6P12080_001	Banana	cytosol	82.28	84.2
GSMUA_Achr8P16370_001	Banana	cytosol	81.01	82.9
VIT_17s0000g10250.t01	Wine grape	cytosol	80.25	82.12
KRH03906	Soybean	nucleus	79.75	81.61
Bra013838.1-P	Field mustard	cytosol	79.49	81.14
CDY34315	Canola	cytosol	79.49	81.14
CDX92654	Canola	cytosol	79.24	80.88
GSMUA_Achr10P...	Banana	cytosol	78.99	80.83
CDY03414	Canola	cytosol	78.99	80.62
PGSC0003DMT400062214	Potato	cytosol	78.23	80.05
Solyc07g009140.2.1	Tomato	nucleus	78.23	80.05
KRH57185	Soybean	cytosol	77.72	79.53
AT4G24820.1	Thale cress	cytosol	77.72	79.33
KRH57190	Soybean	cytosol	76.71	78.91
CDY08956	Canola	extracellular, golgi	55.44	65.57
CDY34374	Canola	nucleus	18.48	58.87
PGSC0003DMT400062212	Potato	cytosol	14.18	39.16
TraesCS1D01G187600.1	Wheat	cytosol	18.48	19.06
TraesCS4D01G350200.1	Wheat	cytosol, golgi	20.25	17.94
TraesCS5D01G238500.1	Wheat	cytosol	11.14	13.21

Protein Annotations

EnsemblPlants:TraesCS6D01G195300.1	EnsemblPlantsGene:TraesCS6D01G195300	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD6	InterPro:Rpn7/CSN1	InterPro:WH_DNA-bd_sf	ncoils:Coil
PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	SEG:seg
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	MapMan:19.2.6.2.2.6	:	:

Description

No Description!

Coordinates

chr6D:+:271005235..271008346

Molecular Weight (calculated)

44757.8 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.156

Length

395 amino acids

Sequence
(BLAST)

001: MDGGGGGGST SGDDGKQEKH LVLAHKLFLL SHPDVDDLSK VDLRSDVLSA VKSDDMAPLF ESLAAAGVLE PDAVLLSEMR ARIDEEIRKL DEKIADAEEN
101: LGESEVREAH LAKSLYFVKV GEKEKALEQL KVTEGKTVAI GQKMDLVFYT LQIGLFYMDF DLISKSVDKA KKLFEEGGDW ERKNRLKVYE GLYCMATRNF
201: KKATSLFLDS ISTFTTYELF PYDTFIFYTV LTSIISLDRV SLKQKVVDAP EILAVISKVP HLSEFLNSLY NCQYKSFFVA FSGLTEQIKL DRYLQPHFRY
301: YMREVRTVVY SQFLESYKSV TMEAMASAFG VTVDFIDQEL SRFIAAGKLH CKIDKVAGVL ETNRPDERNA FYQSTIKQGD FLLNRIQKLS RVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.