CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03906	Soybean	nucleus	97.41	97.41
KRH57190	Soybean	cytosol	94.82	95.31
VIT_17s0000g10250.t01	Wine grape	cytosol	88.08	88.08
Solyc07g009140.2.1	Tomato	nucleus	85.23	85.23
PGSC0003DMT400062214	Potato	cytosol	84.97	84.97
GSMUA_Achr8P16370_001	Banana	cytosol	83.68	83.68
Bra013838.1-P	Field mustard	cytosol	83.42	83.2
CDY34315	Canola	cytosol	83.42	83.2
AT4G24820.1	Thale cress	cytosol	83.16	82.95
CDX92654	Canola	cytosol	83.16	82.95
CDY03414	Canola	cytosol	83.16	82.95
GSMUA_Achr6P12080_001	Banana	cytosol	82.38	82.38
Os04t0485000-01	Rice	plasma membrane	81.87	81.23
GSMUA_Achr10P...	Banana	cytosol	81.09	81.09
HORVU2Hr1G083860.1	Barley	cytosol	81.09	80.67
Zm00001d017117_P001	Maize	plasma membrane	80.83	80.21
TraesCS2A01G320800.1	Wheat	cytosol	80.57	80.15
OQU85258	Sorghum	cytosol	80.57	79.95
KXG26586	Sorghum	cytosol	80.31	79.9
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.31	79.9
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.31	79.9
TraesCS6B01G242700.1	Wheat	cytosol	79.53	77.72
TraesCS6D01G195300.1	Wheat	golgi, unclear	79.53	77.72
TraesCS6A01G212300.1	Wheat	cytosol	79.79	76.62
HORVU0Hr1G004970.2	Barley	cytosol	75.13	73.42
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	80.05	73.4
KRH04710	Soybean	extracellular	40.41	68.72
CDY08956	Canola	extracellular, golgi	58.29	67.37
CDY34374	Canola	nucleus	19.95	62.1
Zm00001d003257_P002	Maize	plastid	77.2	57.64
KRH48239	Soybean	cytosol	17.88	15.47
KRH65148	Soybean	cytosol	17.62	15.32

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100789022	MapMan:19.2.6.2.2.6	UniProt:A0A0R0JQT3	EMBL:ACUP02002815	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G044500	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717
EnsemblPlants:KRH57185	ProteinID:KRH57185	ProteinID:KRH57185.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602
PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00019AA9BE	InterPro:WH_DNA-bd_sf	:	:

Description

hypothetical protein

Coordinates

chr5:+:3975391..3979225

Molecular Weight (calculated)

44631.7 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.197

Length

386 amino acids

Sequence
(BLAST)

001: MEGEEGSQQP QLVLGDKLFL LRQPDVQDID KVRYKEDVFT HINQNDMVPL YETLVADSVL DLDRALLDSM RAKIHDELAN LDEKIADAEE NLGESEVREA
101: HLAKSLFFIR IMDKEKALEH LKVTETKTVA VGQKMDLVFY TLQLGFFDMD FDLISKSIDK AKNLFEEGGD WERKNRLKVY EGLYCMSTRN FEKAAKLFLD
201: SISTFTTYEL FPYDTFIFYT VLTSIISLDR VSLKQKVVDA PEILTVIGKI PYLSEFLNSL YDCQYKSFFS AFAGLTEQIK LDRYLHPHFR YYMREVRTVV
301: YSQFLESYKS VTIEAMAKAF GVTEDFIDVE LSRFIAAGKL HCKIDKVEGV LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.