Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G320800.1 | Wheat | cytosol | 99.23 | 99.23 |
| TraesCS2B01G361900.1 | Wheat | golgi, plastid | 98.97 | 98.97 |
| TraesCS2D01G341500.1 | Wheat | golgi, unclear | 98.2 | 98.2 |
| Os04t0485000-01 | Rice | plasma membrane | 92.27 | 92.03 |
| KXG26586 | Sorghum | cytosol | 92.01 | 92.01 |
| HORVU0Hr1G004970.2 | Barley | cytosol | 88.92 | 87.34 |
| HORVU6Hr1G054100.2 | Barley | cytosol, nucleus | 90.72 | 83.61 |
| GSMUA_Achr8P16370_001 | Banana | cytosol | 82.73 | 83.16 |
| GSMUA_Achr6P12080_001 | Banana | cytosol | 82.47 | 82.9 |
| KRH03906 | Soybean | nucleus | 82.47 | 82.9 |
| VIT_17s0000g10250.t01 | Wine grape | cytosol | 82.22 | 82.64 |
| KRH57185 | Soybean | cytosol | 80.67 | 81.09 |
| KRH57190 | Soybean | cytosol | 80.15 | 80.99 |
| CDX92654 | Canola | cytosol | 80.67 | 80.88 |
| GSMUA_Achr10P... | Banana | cytosol | 80.41 | 80.83 |
| Bra013838.1-P | Field mustard | cytosol | 80.41 | 80.62 |
| CDY34315 | Canola | cytosol | 80.41 | 80.62 |
| Solyc07g009140.2.1 | Tomato | nucleus | 80.15 | 80.57 |
| PGSC0003DMT400062214 | Potato | cytosol | 79.9 | 80.31 |
| CDY03414 | Canola | cytosol | 79.9 | 80.1 |
| AT4G24820.1 | Thale cress | cytosol | 79.12 | 79.33 |
| CDY08956 | Canola | extracellular, golgi | 55.67 | 64.67 |
| Zm00001d003257_P002 | Maize | plastid | 84.28 | 63.25 |
| CDY34374 | Canola | nucleus | 19.07 | 59.68 |
| PGSC0003DMT400062212 | Potato | cytosol | 13.92 | 37.76 |
| HORVU7Hr1G069880.1 | Barley | cytosol | 3.09 | 28.57 |
| HORVU6Hr1G027500.11 | Barley | plastid | 15.72 | 21.48 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 6.19 | 21.43 |
| HORVU1Hr1G048620.1 | Barley | plastid | 20.1 | 16.02 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 20.1 | 14.18 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.6.2.2.6 | EMBL:AK364186 | ncoils:Coil | UniProt:F2DJW8 | GO:GO:0003674 |
| GO:GO:0008150 | GO:GO:0030234 | GO:GO:0050790 | EnsemblPlantsGene:HORVU2Hr1G083860 | EnsemblPlants:HORVU2Hr1G083860.1 | InterPro:IPR000717 |
| InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 | InterPro:PSMD6 | PANTHER:PTHR14145 |
| PANTHER:PTHR14145:SF1 | InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI00020066FF |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DJW8]
Coordinates
chrchr2H:-:608070575..608075411
Molecular Weight (calculated)
44070.1 Da
IEP (calculated)
5.039
GRAVY (calculated)
-0.112
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGEEGKQ QPQLVLAHKL FLLSQPDVDD LAKVGLRDDV LAAVKSDDMA ALYESLAADG VLEMDAALLA EMRGRIEEET RKFDEKIADA EENLGESEVR
101: EAHLAKSLYF IRVGEKEKAL EQLKVTEGKT VAVGQKMDLV FYTLQIGLFH MDFDLISKSV DKAKILFEEG GDWERKNRLK VYEGLYCMAT RNFKKATSLF
201: LDSVSTFTTY ELFPYDTFIF YTVLTSVITL DRVSLKQKVV DAPEILAVIG KVPHLSEFLN SLYDCQYKSF FVAFSGLTEQ IKLDRYLQPH FRYFMREVRT
301: VVYSQFLESY KSVTMEAMAA AFGVTVDFID QELSRFIAAG KLHCKIDKVA GVLETNRPDA RNAFYQSTIK QGDFLLNRIQ KLSRVIDL
101: EAHLAKSLYF IRVGEKEKAL EQLKVTEGKT VAVGQKMDLV FYTLQIGLFH MDFDLISKSV DKAKILFEEG GDWERKNRLK VYEGLYCMAT RNFKKATSLF
201: LDSVSTFTTY ELFPYDTFIF YTVLTSVITL DRVSLKQKVV DAPEILAVIG KVPHLSEFLN SLYDCQYKSF FVAFSGLTEQ IKLDRYLQPH FRYFMREVRT
301: VVYSQFLESY KSVTMEAMAA AFGVTVDFID QELSRFIAAG KLHCKIDKVA GVLETNRPDA RNAFYQSTIK QGDFLLNRIQ KLSRVIDL
001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL
Arabidopsis Description
RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.