Factsheet for Solyc07g009140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062214	Potato	cytosol	99.74	99.74
VIT_17s0000g10250.t01	Wine grape	cytosol	86.27	86.27
KRH03906	Soybean	nucleus	86.27	86.27
KRH57185	Soybean	cytosol	85.23	85.23
GSMUA_Achr8P16370_001	Banana	cytosol	84.2	84.2
KRH57190	Soybean	cytosol	83.68	84.11
GSMUA_Achr6P12080_001	Banana	cytosol	83.16	83.16
CDX92654	Canola	cytosol	82.12	81.91
CDY03414	Canola	cytosol	81.61	81.4
Bra013838.1-P	Field mustard	cytosol	81.35	81.14
AT4G24820.1	Thale cress	cytosol	81.35	81.14
CDY34315	Canola	cytosol	81.35	81.14
GSMUA_Achr10P...	Banana	cytosol	81.09	81.09
Os04t0485000-01	Rice	plasma membrane	81.61	80.98
OQU85258	Sorghum	cytosol	81.61	80.98
Zm00001d017117_P001	Maize	plasma membrane	81.09	80.46
HORVU2Hr1G083860.1	Barley	cytosol	80.57	80.15
TraesCS2A01G320800.1	Wheat	cytosol	80.31	79.9
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.05	79.64
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.05	79.64
KXG26586	Sorghum	cytosol	79.27	78.87
TraesCS6D01G195300.1	Wheat	golgi, unclear	80.05	78.23
TraesCS6B01G242700.1	Wheat	cytosol	79.79	77.97
TraesCS6A01G212300.1	Wheat	cytosol	80.31	77.11
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	80.57	73.87
HORVU0Hr1G004970.2	Barley	cytosol	73.58	71.9
CDY08956	Canola	extracellular, golgi	57.51	66.47
CDY34374	Canola	nucleus	18.39	57.26
Zm00001d003257_P002	Maize	plastid	75.13	56.09
Solyc01g091650.2.1	Tomato	cytosol	19.43	17.05

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	ncoils:Coil	GO:GO:0003674	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0043161	GO:GO:0050790
InterPro:IPR000717	UniProt:K4CC33	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	EnsemblPlantsGene:Solyc07g009140.2	EnsemblPlants:Solyc07g009140.2.1	UniParc:UPI000276B7FB	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr7:+:4157332..4163343

Molecular Weight (calculated)

44349.8 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.128

Length

386 amino acids

Sequence
(BLAST)

001: MDSEEGTQQP QLVLAHKLFL LTHPDVNDLD KVRLREEVLE AVVSNDMAPL FETLVSKGVF SLNLEVLDPM RVKNADELKK LDEKIADAEE NLGESEVREA
101: HLAKSLFYIR IGDKGKALEQ LKVTEKKTVA VGQKMDLVFY TLQMGLFDLD FDLISKCIDK AKKLFEKGGD WERKNRLKVY EGLFCMSTRN FKKAADLFLD
201: SISTFTTYEL FPYDTFIFYT VLTSIITLDR VSLKQKVVDA PEILTVIGKI PYLSEFMNSL YDCQYKSFFS AFAGLMEHIK LDRYLQPHFR YYMREVRTVV
301: YSQFLESYKS VTIEAMAKAF GVSEDFIDLE LSRFIAAGKL HCKIDKVAGV LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.