Factsheet for VIT_17s0000g10250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03906	Soybean	nucleus	90.16	90.16
GSMUA_Achr6P12080_001	Banana	cytosol	88.86	88.86
KRH57190	Soybean	cytosol	87.82	88.28
KRH57185	Soybean	cytosol	88.08	88.08
GSMUA_Achr8P16370_001	Banana	cytosol	88.08	88.08
GSMUA_Achr10P...	Banana	cytosol	86.53	86.53
Solyc07g009140.2.1	Tomato	nucleus	86.27	86.27
PGSC0003DMT400062214	Potato	cytosol	86.01	86.01
CDX92654	Canola	cytosol	85.49	85.27
CDY03414	Canola	cytosol	84.97	84.75
Bra013838.1-P	Field mustard	cytosol	84.72	84.5
CDY34315	Canola	cytosol	84.72	84.5
Os04t0485000-01	Rice	plasma membrane	84.2	83.55
AT4G24820.1	Thale cress	cytosol	83.68	83.46
KXG26586	Sorghum	cytosol	83.42	82.99
HORVU2Hr1G083860.1	Barley	cytosol	82.64	82.22
Zm00001d017117_P001	Maize	plasma membrane	82.64	82.01
TraesCS2A01G320800.1	Wheat	cytosol	82.38	81.96
OQU85258	Sorghum	cytosol	82.38	81.75
TraesCS2B01G361900.1	Wheat	golgi, plastid	82.12	81.7
TraesCS2D01G341500.1	Wheat	golgi, unclear	82.12	81.7
TraesCS6D01G195300.1	Wheat	golgi, unclear	82.12	80.25
TraesCS6B01G242700.1	Wheat	cytosol	81.87	80.0
TraesCS6A01G212300.1	Wheat	cytosol	82.38	79.1
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	82.9	76.01
HORVU0Hr1G004970.2	Barley	cytosol	77.46	75.7
CDY08956	Canola	extracellular, golgi	60.36	69.76
CDY34374	Canola	nucleus	20.73	64.52
Zm00001d003257_P002	Maize	plastid	79.02	58.99
VIT_15s0048g01980.t01	Wine grape	cytosol	20.21	17.69

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100258219	wikigene:100258219	MapMan:19.2.6.2.2.6	ProteinID:CBI14864	ProteinID:CBI14864.3
ncoils:Coil	UniProt:D7SHA5	EMBL:FN594950	GO:GO:0003674	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0043161	GO:GO:0050790
InterPro:IPR000717	EntrezGene:LOC100258219	wikigene:LOC100258219	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602
PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	TIGR:TC55577	TIGR:TC57787	UniParc:UPI00015CDAB8	ArrayExpress:VIT_17s0000g10250
EnsemblPlantsGene:VIT_17s0000g10250	EnsemblPlants:VIT_17s0000g10250.t01	unigene:Vvi.3520	InterPro:WH_DNA-bd_sf	RefSeq:XP_002262921	RefSeq:XP_002262921.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:12501669..12507037

Molecular Weight (calculated)

44289.5 Da

IEP (calculated)

5.371

GRAVY (calculated)

-0.110

Length

386 amino acids

Sequence
(BLAST)

001: MESQDGTQQP HLVLAHKLFL LTHPDAQDIE KVRLKEEVFA AVKVDDMASL YETLAADSVL EMDQAVLDTM RAKIDDELKK LDEKIADAEE NLGESEVREA
101: HLAKSLFYIR IGDKEKALEQ LKVTESKTVA VGQKMDLVFY TLLLGFFYMD FDLISKSIDK AKNLFEEGGD WERKNRLKVY EGLYCMSTRN FKKAANLFLD
201: SISTFTTYEL FPYDTFIFYT VLTSIISLDR VSLKQKVVDA PEILAVIGKI PYLSEFLNSL YDCQYKSFFS AFAGLAEQIK LDRYLHPHFR YYMREVRTVV
301: YSQFLESYKS VTIEAMAKAF GVTVEFIDLE LSRFIAAGKL HCKIDKVAGV LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.