Factsheet for HORVU6Hr1G054100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G195300.1	Wheat	golgi, unclear	90.26	96.2
TraesCS6B01G242700.1	Wheat	cytosol	90.02	95.95
TraesCS6A01G212300.1	Wheat	cytosol	90.74	95.02
Zm00001d017117_P001	Maize	plasma membrane	85.04	92.03
OQU85258	Sorghum	cytosol	84.8	91.77
HORVU2Hr1G083860.1	Barley	cytosol	83.61	90.72
GSMUA_Achr6P12080_001	Banana	cytosol	77.2	84.2
GSMUA_Achr8P16370_001	Banana	cytosol	76.48	83.42
VIT_17s0000g10250.t01	Wine grape	cytosol	76.01	82.9
KRH03906	Soybean	nucleus	75.3	82.12
HORVU0Hr1G004970.2	Barley	cytosol	76.72	81.77
Bra013838.1-P	Field mustard	cytosol	74.82	81.4
CDY34315	Canola	cytosol	74.82	81.4
CDX92654	Canola	cytosol	74.35	80.88
CDY03414	Canola	cytosol	74.35	80.88
GSMUA_Achr10P...	Banana	cytosol	74.11	80.83
Solyc07g009140.2.1	Tomato	nucleus	73.87	80.57
PGSC0003DMT400062214	Potato	cytosol	73.87	80.57
KRH57185	Soybean	cytosol	73.4	80.05
KRH57190	Soybean	cytosol	72.92	79.95
AT4G24820.1	Thale cress	cytosol	73.16	79.59
CDY08956	Canola	extracellular, golgi	52.73	66.47
CDY34374	Canola	nucleus	17.34	58.87
PGSC0003DMT400062212	Potato	cytosol	13.54	39.86
HORVU7Hr1G069880.1	Barley	cytosol	3.09	30.95
HORVU6Hr1G027500.11	Barley	plastid	14.73	21.83
HORVU0Hr1G029090.1	Barley	endoplasmic reticulum	5.7	21.43
HORVU1Hr1G048620.1	Barley	plastid	19.0	16.43
HORVU4Hr1G086160.1	Barley	cytosol	19.71	15.09

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	UniProt:A0A287U7L4	ncoils:Coil	GO:GO:0003674	GO:GO:0008150
GO:GO:0030234	GO:GO:0050790	EnsemblPlantsGene:HORVU6Hr1G054100	EnsemblPlants:HORVU6Hr1G054100.2	InterPro:IPR000717	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1
InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B47AFE4	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:341709382..341714812

Molecular Weight (calculated)

47711.3 Da

IEP (calculated)

5.771

GRAVY (calculated)

-0.243

Length

421 amino acids

Sequence
(BLAST)

001: VRTPDAVRSK RTNRREVPST QTSGDEMDGG GGGGSTSGED GKQEKHLLLA HKLFLLSHPD VDDLSKVDIR SDVLSAVKSD DMAPLFESLA ATGVLEPDAA
101: LLAEMRARID EEIRKLDEKI ADAEENLGES EVREAHLAKS LYFVKVGEKE KALEQLKVTE GKTVAIGQKM DLVFYTLQIG LFYMDFDLIS KSIDKAKKLF
201: EEGGDWERKN RLKVYEGLYC MATRNFKKAT SLFLDSISTF TTYELFPYDT FIFYTVLTSI ISLDRVSLKQ KVVDAPEILA VIGKVPHLSE FLNSLYNCQY
301: KSFFVAFSGL MEQIKLDRYL QPHFRYYMRE VRTVVYSQFL ESYKSVTMEA MASAFGVTVD FIDQELSRFI AAGKLHCKID KVAGVLETNR PDERNAFYQS
401: TIKQGDFLLN RIQKLSRVID L

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.