CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34374	Canola	nucleus	31.44	84.68
CDX92654	Canola	cytosol	81.44	70.28
CDY34315	Canola	cytosol	81.14	70.03
CDY03414	Canola	cytosol	80.54	69.51
VIT_17s0000g10250.t01	Wine grape	cytosol	69.76	60.36
KRH57190	Soybean	cytosol	68.26	59.38
KRH03906	Soybean	nucleus	67.96	58.81
GSMUA_Achr8P16370_001	Banana	cytosol	67.66	58.55
KRH57185	Soybean	cytosol	67.37	58.29
Solyc07g009140.2.1	Tomato	nucleus	66.47	57.51
GSMUA_Achr10P...	Banana	cytosol	66.47	57.51
GSMUA_Achr6P12080_001	Banana	cytosol	66.47	57.51
Os04t0485000-01	Rice	plasma membrane	66.47	57.07
Zm00001d017117_P001	Maize	plasma membrane	66.17	56.81
OQU85258	Sorghum	cytosol	65.57	56.3
TraesCS2D01G341500.1	Wheat	golgi, unclear	64.97	55.93
HORVU2Hr1G083860.1	Barley	cytosol	64.67	55.67
TraesCS2A01G320800.1	Wheat	cytosol	64.67	55.67
TraesCS2B01G361900.1	Wheat	golgi, plastid	64.67	55.67
TraesCS6B01G242700.1	Wheat	cytosol	65.57	55.44
TraesCS6D01G195300.1	Wheat	golgi, unclear	65.57	55.44
TraesCS6A01G212300.1	Wheat	cytosol	65.87	54.73
KXG26586	Sorghum	cytosol	63.47	54.64
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	66.47	52.73
HORVU0Hr1G004970.2	Barley	cytosol	57.78	48.86
PGSC0003DMT400062212	Potato	cytosol	17.07	39.86
Zm00001d003257_P002	Maize	plastid	59.28	38.3
CDY65304	Canola	cytosol	15.87	11.96
CDY52333	Canola	cytosol	15.87	11.94
CDX67853	Canola	cytosol	15.57	11.48
CDY45683	Canola	cytosol	15.57	11.48
CDX79636	Canola	cytosol, nucleus, peroxisome	10.78	7.63
CDX75945	Canola	cytosol	7.49	6.65

Protein Annotations

EnsemblPlants:CDY08956	EnsemblPlantsGene:GSBRNA2T00001001001	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234
GO:GO:0050790	InterPro:PSMD6	InterPro:Rpn7/CSN1	ncoils:Coil	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1
PFAM:PF10602	ProteinID:CDY08956	ProteinID:CDY08956.1	UniParc:UPI0004EDF137	UniProt:A0A078F6C8	MapMan:19.2.6.2.2.6

Description

BnaC08g11860DBnaC08g11860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6C8]

Coordinates

chrLK031990:-:799062..802276

Molecular Weight (calculated)

38408.6 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.009

Length

334 amino acids

Sequence
(BLAST)

001: MFLRQWYLIS ILQHLHLLKS TKMQEFNLPV LGSLLHVDFF LSLNRIECGA EGTQQPHLIL AHKLFLLTHP DVQDIEKVQL KSDVLDSIES DGMAPLFETL
101: AASSVLELDQ SLLDPMRASN EEELKKLDEK IVDAEENLGE SEVREAHLAK ALYFIRISDK LKALEQLKLT EGKTVAVGQK MDLVFYTLQL AFFYMDFDLV
201: SKSIDKAKKL FEEGGDWERK NRLKVYEGLY CMSTRNFKKA ASLFLDSIST FTTYEIFPYE TFIFYTVLTS IITLDRVSLK QKVVDAPEIL TVLGKIPFLS
301: EFLNSLYECQ YKAFFSAFAG MAEQIKFDRL DQKV

Best Arabidopsis Sequence Match ( AT4G24820.1 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.