CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062212	Potato	cytosol	37.1	32.17
CDY08956	Canola	extracellular, golgi	84.68	31.44
CDY34315	Canola	cytosol	86.29	27.65
CDX92654	Canola	cytosol	85.48	27.39
CDY03414	Canola	cytosol	85.48	27.39
VIT_17s0000g10250.t01	Wine grape	cytosol	64.52	20.73
KRH57190	Soybean	cytosol	63.71	20.57
KRH03906	Soybean	nucleus	63.71	20.47
KRH57185	Soybean	cytosol	62.1	19.95
GSMUA_Achr8P16370_001	Banana	cytosol	60.48	19.43
TraesCS2D01G341500.1	Wheat	golgi, unclear	60.48	19.33
TraesCS2A01G320800.1	Wheat	cytosol	60.48	19.33
Os04t0485000-01	Rice	plasma membrane	60.48	19.28
GSMUA_Achr10P...	Banana	cytosol	59.68	19.17
TraesCS2B01G361900.1	Wheat	golgi, plastid	59.68	19.07
HORVU2Hr1G083860.1	Barley	cytosol	59.68	19.07
GSMUA_Achr6P12080_001	Banana	cytosol	58.87	18.91
TraesCS6D01G195300.1	Wheat	golgi, unclear	58.87	18.48
Solyc07g009140.2.1	Tomato	nucleus	57.26	18.39
TraesCS6B01G242700.1	Wheat	cytosol	58.06	18.23
TraesCS6A01G212300.1	Wheat	cytosol	58.87	18.16
KXG26586	Sorghum	cytosol	56.45	18.04
Zm00001d017117_P001	Maize	plasma membrane	56.45	17.99
OQU85258	Sorghum	cytosol	55.65	17.74
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	58.87	17.34
HORVU0Hr1G004970.2	Barley	cytosol	41.13	12.91
Zm00001d003257_P002	Maize	plastid	42.74	10.25
CDY45683	Canola	cytosol	12.1	3.31
CDX67853	Canola	cytosol	12.1	3.31
CDX79636	Canola	cytosol, nucleus, peroxisome	12.1	3.18
CDY52333	Canola	cytosol	11.29	3.15
CDY65304	Canola	cytosol	10.48	2.93
CDX75945	Canola	cytosol	4.84	1.6

Protein Annotations

EnsemblPlants:CDY34374	EnsemblPlantsGene:GSBRNA2T00056432001	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:PSMD6	InterPro:Rpn7/CSN1	ncoils:Coil	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	PFAM:PF10602
ProteinID:CDY34374	ProteinID:CDY34374.1	UniParc:UPI0004EEE3E6	UniProt:A0A078HA49	MapMan:35.1	:

Description

BnaA09g11160DBnaA09g11160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA49]

Coordinates

chrLK032333:-:186697..188250

Molecular Weight (calculated)

13823.5 Da

IEP (calculated)

4.471

GRAVY (calculated)

-0.281

Length

124 amino acids

Sequence
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVQDI EKVQLKSDVL DSIKSDGMAP LYETLAASSV LELDQSLLDS MRASNEEELK KLDEKIADAE ENLGGSEVRE
101: ALLAKALYFI RISDKYLHRR ILWG

Best Arabidopsis Sequence Match ( AT4G24820.1 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.