Factsheet for HORVU0Hr1G004970.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G083860.1	Barley	cytosol	87.34	88.92
TraesCS2A01G320800.1	Wheat	cytosol	86.58	88.14
TraesCS2B01G361900.1	Wheat	golgi, plastid	86.33	87.89
TraesCS2D01G341500.1	Wheat	golgi, unclear	85.82	87.37
KXG26586	Sorghum	cytosol	83.04	84.54
Os04t0485000-01	Rice	plasma membrane	81.77	83.03
VIT_17s0000g10250.t01	Wine grape	cytosol	75.7	77.46
GSMUA_Achr6P12080_001	Banana	cytosol	75.44	77.2
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	81.77	76.72
GSMUA_Achr8P16370_001	Banana	cytosol	74.94	76.68
KRH03906	Soybean	nucleus	74.94	76.68
KRH57190	Soybean	cytosol	73.42	75.52
KRH57185	Soybean	cytosol	73.42	75.13
GSMUA_Achr10P...	Banana	cytosol	73.16	74.87
CDX92654	Canola	cytosol	72.91	74.42
Bra013838.1-P	Field mustard	cytosol	72.66	74.16
CDY34315	Canola	cytosol	72.66	74.16
CDY03414	Canola	cytosol	72.41	73.9
Solyc07g009140.2.1	Tomato	nucleus	71.9	73.58
AT4G24820.1	Thale cress	cytosol	71.9	73.39
PGSC0003DMT400062214	Potato	cytosol	71.65	73.32
Zm00001d003257_P002	Maize	plastid	81.27	62.09
CDY08956	Canola	extracellular, golgi	48.86	57.78
CDY34374	Canola	nucleus	12.91	41.13
HORVU7Hr1G069880.1	Barley	cytosol	3.04	28.57
HORVU0Hr1G029090.1	Barley	endoplasmic reticulum	6.08	21.43
PGSC0003DMT400062212	Potato	cytosol	7.34	20.28
HORVU6Hr1G027500.11	Barley	plastid	14.18	19.72
HORVU1Hr1G048620.1	Barley	plastid	18.48	14.99
HORVU4Hr1G086160.1	Barley	cytosol	17.97	12.91

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	UniProt:A0A287DVX7	ncoils:Coil	GO:GO:0003674	GO:GO:0008150
GO:GO:0030234	GO:GO:0050790	EnsemblPlantsGene:HORVU0Hr1G004970	EnsemblPlants:HORVU0Hr1G004970.2	InterPro:IPR000717	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1
InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B46B8EE	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:28248530..28251051

Molecular Weight (calculated)

39499.6 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.089

Length

395 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VKSDDMAALY ESLAADGVLE MDAALLAEMR GRIEEETRKF DEKIADAEEN
101: LGESEVREAH LAKSLYFIRV GEKEKALEQL KVTEGKTVAV GQKMDLVFYT LQIGLFHMDF DLISKSVDKA KILFEEGGDW ERKNRLKVYE GLYCMATRNF
201: KKATSLFLDS VSTFTTYELF PYDTFIFYTV LTSVITLDRV SLKQKVVDAP EILAVIGKVP HLSEFLNSLY DCQYKSFFVA FSGLTEQIKL DRYLQPHFRY
301: FMREVRTVVY SQFLESYKSV TMEAMAAAFG VTVDFIDQEL SRFIAAGKLH CKIDKVAGVL ETNRPDARNA FYQSTIKQGD FLLNRIQKLS RVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.