Factsheet for PGSC0003DMT400062214

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g009140.2.1	Tomato	nucleus	99.74	99.74
VIT_17s0000g10250.t01	Wine grape	cytosol	86.01	86.01
KRH03906	Soybean	nucleus	86.01	86.01
KRH57185	Soybean	cytosol	84.97	84.97
GSMUA_Achr8P16370_001	Banana	cytosol	83.94	83.94
KRH57190	Soybean	cytosol	83.42	83.85
GSMUA_Achr6P12080_001	Banana	cytosol	83.16	83.16
GSMUA_Achr10P...	Banana	cytosol	81.09	81.09
Os04t0485000-01	Rice	plasma membrane	81.61	80.98
OQU85258	Sorghum	cytosol	81.61	80.98
Zm00001d017117_P001	Maize	plasma membrane	81.09	80.46
HORVU2Hr1G083860.1	Barley	cytosol	80.31	79.9
TraesCS2A01G320800.1	Wheat	cytosol	80.05	79.64
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.05	79.64
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.05	79.64
KXG26586	Sorghum	cytosol	79.27	78.87
TraesCS6D01G195300.1	Wheat	golgi, unclear	80.05	78.23
TraesCS6B01G242700.1	Wheat	cytosol	79.79	77.97
TraesCS6A01G212300.1	Wheat	cytosol	80.31	77.11
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	80.57	73.87
HORVU0Hr1G004970.2	Barley	cytosol	73.32	71.65
PGSC0003DMT400062212	Potato	cytosol	24.09	65.03
Zm00001d003257_P002	Maize	plastid	75.13	56.09
PGSC0003DMT400071374	Potato	cytosol	19.17	16.82

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102600142	MapMan:19.2.6.2.2.6	ncoils:Coil	GO:GO:0003674	GO:GO:0008150
GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717	UniProt:M1C8Q0	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF10602	EnsemblPlantsGene:PGSC0003DMG402024210	PGSC:PGSC0003DMG402024210	EnsemblPlants:PGSC0003DMT400062214	PFscan:PS50250	InterPro:PSMD6
PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI00029505A5	InterPro:WH_DNA-bd_sf	RefSeq:XP_006366835.1	SEG:seg	:	:

Description

26S proteasome subunit RPN7 [Source:PGSC_GENE;Acc:PGSC0003DMG402024210]

Coordinates

chr7:+:7049853..7056885

Molecular Weight (calculated)

44363.9 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.128

Length

386 amino acids

Sequence
(BLAST)

001: MDSEEGTQQP QLVLAHKLFL LTHPDVNDLD KVRLREEVLE AVVSNDMAPL FETLVSKGVF SLNLEVLDPM RVKNADELKK LDEKIADAEE NLGESEVREA
101: HLAKSLFYIR IGDKGKALEQ LKVTEKKTVA VGQKMDLVFY TLQMGLFDLD FDLISKCIDK AKKLFEKGGD WERKNRLKVY EGLFCMSTRN FKKAADLFLD
201: SISTFTTYEL FPYDTFIFYT VLTSIITLDR VSLKQKVVDA PEILTVIGKI PYLSEFMNSL YECQYKSFFS AFAGLMEHIK LDRYLQPHFR YYMREVRTVV
301: YSQFLESYKS VTIEAMAKAF GVSEDFIDLE LSRFIAAGKL HCKIDKVAGV LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.