Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g091650.2.1 | Tomato | cytosol | 98.64 | 98.64 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 82.95 | 82.77 |
| KRH65148 | Soybean | cytosol | 82.95 | 82.21 |
| KRH48239 | Soybean | cytosol | 82.73 | 81.61 |
| AT3G61140.1 | Thale cress | cytosol | 77.5 | 77.32 |
| Bra003438.1-P | Field mustard | cytosol | 78.41 | 76.16 |
| CDX67853 | Canola | cytosol | 78.41 | 76.16 |
| CDY45683 | Canola | cytosol | 77.95 | 75.72 |
| Bra007576.1-P | Field mustard | cytosol | 74.77 | 75.46 |
| CDY65304 | Canola | cytosol | 75.91 | 75.39 |
| CDY52333 | Canola | cytosol | 75.91 | 75.23 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 19.09 | 75.0 |
| EER92981 | Sorghum | cytosol | 71.59 | 71.11 |
| GSMUA_Achr11P... | Banana | cytosol | 72.95 | 71.02 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 71.59 | 70.79 |
| Os03t0116500-01 | Rice | cytosol | 70.91 | 70.75 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 72.95 | 70.7 |
| GSMUA_Achr11P... | Banana | cytosol | 72.27 | 70.67 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 61.14 | 70.23 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 69.32 | 68.39 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 69.09 | 68.16 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 69.09 | 68.01 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 65.91 | 66.51 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 66.82 | 65.48 |
| HORVU1Hr1G048620.1 | Barley | plastid | 67.05 | 60.57 |
| HORVU6Hr1G027500.11 | Barley | plastid | 37.95 | 58.8 |
| Zm00001d048502_P002 | Maize | cytosol | 22.27 | 57.31 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 68.18 | 54.55 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 35.0 | 46.25 |
| TraesCS7B01G257700.1 | Wheat | plastid | 41.82 | 26.94 |
| PGSC0003DMT400062214 | Potato | cytosol | 16.82 | 19.17 |
| PGSC0003DMT400062212 | Potato | cytosol | 5.0 | 15.38 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:102588514 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006461 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006972 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009628 | GO:GO:0009646 | GO:GO:0009651 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| InterPro:IPR000717 | UniProt:M1CNN0 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | EnsemblPlantsGene:PGSC0003DMG400027768 |
| PGSC:PGSC0003DMG400027768 | EnsemblPlants:PGSC0003DMT400071374 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000296C40E | InterPro:WH_DNA-bd_sf | RefSeq:XP_006339459.1 |
Description
Cop11 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027768]
Coordinates
chr1:-:71084833..71091174
Molecular Weight (calculated)
50209.8 Da
IEP (calculated)
6.658
GRAVY (calculated)
-0.400
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPDEDLGLI ADEIYANGDE NTQRHRPIIS SEQLDVEAYA ALYSGRTKIM RLHFIADRCG NASMQLEALR MAYDEIKKGE NTQLFREVVQ KIDGRLGTNY
101: GPDPAWADSV DRRADLRKEK LESELNAYRT NLIKESIRMG YNDFGDFYYA HGQLGEAFKN YVRTRDYCTT AKHIIHMCLN AILVSIEMGQ FTHVTSYVSK
201: AEQSQDALDA ITVAKLRCAA GLAHLEAKKY KLAARKFLEV GPELGNNYTE VIAPQDVATY GGLCALASFD RAELKSKVID NINFRNFLEL VPEIRELIHD
301: FYTSHYASCL EYLGNLKANL LLDIHLHDHV ETLYDQIRSK ALIQYTHPFV SVDLNMMANA FKTSVAGLEK ELEALITDNQ IQARIDSHNK ILYARHADQR
401: NATFQKVLQT GKEFDRDVRS MLLRANLLKH DYIARTSRKH
101: GPDPAWADSV DRRADLRKEK LESELNAYRT NLIKESIRMG YNDFGDFYYA HGQLGEAFKN YVRTRDYCTT AKHIIHMCLN AILVSIEMGQ FTHVTSYVSK
201: AEQSQDALDA ITVAKLRCAA GLAHLEAKKY KLAARKFLEV GPELGNNYTE VIAPQDVATY GGLCALASFD RAELKSKVID NINFRNFLEL VPEIRELIHD
301: FYTSHYASCL EYLGNLKANL LLDIHLHDHV ETLYDQIRSK ALIQYTHPFV SVDLNMMANA FKTSVAGLEK ELEALITDNQ IQARIDSHNK ILYARHADQR
401: NATFQKVLQT GKEFDRDVRS MLLRANLLKH DYIARTSRKH
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.