Factsheet for PGSC0003DMT400082384

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013225
PGSC0003DMT400016765
PGSC0003DMT400052100
PGSC0003DMT400071374

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	PGSC0003DMT400016765	AT1G26830.1	12615944
AT2G26990.1	PGSC0003DMT400071374	AT3G61140.1	11854419
AT2G26990.1	PGSC0003DMT400071374	AT3G61140.1	12615944
AT2G26990.1	PGSC0003DMT400052100	AT5G14250.1	12615944
AT2G26990.1	PGSC0003DMT400013225	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g062430.1.1	Tomato	cytosol	97.72	97.72
VIT_08s0040g00430.t01	Wine grape	cytosol	90.89	90.68
TraesCS3D01G194400.1	Wheat	nucleus	90.43	90.43
TraesCS3A01G191800.1	Wheat	golgi, unclear	90.43	90.43
Os01t0279200-02	Rice	plasma membrane	90.43	90.43
HORVU3Hr1G039980.8	Barley	nucleus	90.43	90.43
TraesCS3B01G219800.1	Wheat	cytosol	90.2	90.2
KRH64921	Soybean	nucleus	90.2	90.2
EES02774	Sorghum	cytosol	89.52	89.52
KRH57710	Soybean	nucleus	88.84	88.84
PGSC0003DMT400072227	Potato	nucleus	88.38	88.38
KRG94272	Soybean	nucleus	87.47	87.47
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	89.52	87.33
KRG94968	Soybean	cytosol	89.29	87.11
Bra000529.1-P	Field mustard	cytosol	84.74	84.74
AT2G26990.1	Thale cress	cytosol	84.74	84.74
PGSC0003DMT400058484	Potato	cytosol	92.26	84.73
CDX83249	Canola	cytosol	84.51	84.7
CDY38538	Canola	cytosol	84.51	84.51
CDX71478	Canola	cytosol	84.51	84.51
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	89.07	84.27
CDY04472	Canola	cytosol	84.05	84.05
GSMUA_Achr6P08520_001	Banana	cytosol	35.76	82.2
Bra012038.1-P	Field mustard	nucleus	83.14	42.74
PGSC0003DMT400072856	Potato	plastid	18.68	19.39

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102593504	MapMan:19.2.3.3.1.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008180	InterPro:IPR000717	UniProt:M1D5U4	InterPro:PCI_dom	PFAM:PF01399
EnsemblPlantsGene:PGSC0003DMG400032509	PGSC:PGSC0003DMG400032509	EnsemblPlants:PGSC0003DMT400082384	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF3
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00029605E6	InterPro:WH_DNA-bd_sf	RefSeq:XP_006356365.1
SEG:seg	:	:	:	:	:

Description

Cop9 signalosome complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400032509]

Coordinates

chr11:-:35409278..35416071

Molecular Weight (calculated)

51498.8 Da

IEP (calculated)

5.475

GRAVY (calculated)

-0.613

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSEEEPE EQDVDIENQY YNSKGLAETD PEAALEGFAE VVHMEPEKAD WGFKALKQTV KLYYKLGKYK EMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN FDLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDIWE YGRMNKILKQ LHKSCQKEDG TADQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYTKALSV KSAIPHPRIM GIIRECGGKM HMAERQWAEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEIL EFEKILKSNR RTIMDDPFIR NYIEDLLRNV RTQVLLKIIK PYTRIRIPFI SKELNVPEND VEELLVSLIL DNRIHGHIDQ
401: VNRLLECGDR SKEMKKYAAI DKWNTQLRSL YQTVGNRVC

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.