Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64921 | Soybean | nucleus | 95.78 | 98.18 |
| GSMUA_Achr6P23660_001 | Banana | cytosol | 91.56 | 95.15 |
| KRH57710 | Soybean | nucleus | 92.22 | 94.53 |
| VIT_08s0040g00430.t01 | Wine grape | cytosol | 92.22 | 94.32 |
| KRG94272 | Soybean | nucleus | 91.78 | 94.08 |
| Os01t0279200-02 | Rice | plasma membrane | 88.22 | 90.43 |
| EES02774 | Sorghum | cytosol | 87.78 | 89.98 |
| HORVU3Hr1G039980.8 | Barley | nucleus | 87.78 | 89.98 |
| TraesCS3D01G194400.1 | Wheat | nucleus | 87.78 | 89.98 |
| TraesCS3A01G191800.1 | Wheat | golgi, unclear | 87.78 | 89.98 |
| Solyc01g008840.2.1 | Tomato | cytosol | 87.56 | 89.75 |
| Solyc11g062430.1.1 | Tomato | cytosol | 87.56 | 89.75 |
| TraesCS3B01G219800.1 | Wheat | cytosol | 87.56 | 89.75 |
| Solyc10g081150.1.1 | Tomato | nucleus | 87.11 | 89.29 |
| PGSC0003DMT400082384 | Potato | cytosol | 87.11 | 89.29 |
| PGSC0003DMT400072227 | Potato | nucleus | 87.11 | 89.29 |
| Zm00001d040462_P001 | Maize | cytosol, nucleus, peroxisome | 87.56 | 87.56 |
| CDY04472 | Canola | cytosol | 83.11 | 85.19 |
| CDX71478 | Canola | cytosol | 83.11 | 85.19 |
| AT2G26990.1 | Thale cress | cytosol | 82.89 | 84.97 |
| CDY38538 | Canola | cytosol | 82.67 | 84.74 |
| CDX83249 | Canola | cytosol | 82.44 | 84.7 |
| Bra000529.1-P | Field mustard | cytosol | 82.44 | 84.51 |
| Zm00001d008233_P001 | Maize | cytosol, nucleus, peroxisome | 87.11 | 84.48 |
| PGSC0003DMT400058484 | Potato | cytosol | 87.56 | 82.43 |
| Bra012038.1-P | Field mustard | nucleus | 82.67 | 43.56 |
| KRH04812 | Soybean | nucleus | 19.11 | 20.43 |
| KRH61975 | Soybean | cytosol, nucleus, plastid | 18.89 | 20.14 |
| KRH52636 | Soybean | endoplasmic reticulum | 18.67 | 19.91 |
| KRH16194 | Soybean | cytosol | 17.56 | 19.32 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100779900 | MapMan:19.2.3.3.1.2 | UniProt:A0A0R0EWR2 | EMBL:ACUP02012067 | EnsemblPlantsGene:GLYMA_19G121500 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008180 | InterPro:IPR000717 | EnsemblPlants:KRG94968 | ProteinID:KRG94968 | ProteinID:KRG94968.1 |
| InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10678 | PANTHER:PTHR10678:SF3 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0006ED6265 | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr19:+:37981584..37987937
Molecular Weight (calculated)
52890.5 Da
IEP (calculated)
6.729
GRAVY (calculated)
-0.633
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRKNLDRYF GGFGDADMED YGFEYSDEEQ EEQDVDIENQ YYNSKGLVET DPEGALSGFA EVVRMEQEKA EWGFKALKQT VKLYYRLGRY KEMMEAYREM
101: LTYIKSAVTR NYSEKCINSI MDYVSGSASQ NFGLLQEFYQ TTLQALEEAK NERLWFKTNL KLCKIFFDIG EYGRMSKILK ELHKSCQRED GTDDHKKGTQ
201: LLEVYAIEIQ MYTEMKNNKK LKQLYQKALT IKSAIPHPRI MGIIHECGGK MHMAERQWAE AATDFFEAFK NYDEAGNHRR IQCLKYLVLA NMLMESEVNP
301: FDGQEAKPYK NDPEILAMTN LIAAYQRNEI LEFEKILKSN RRTIMDDPFI RNYIEDLLKN IRTQVLLKLI KPYTRIRIPF ISKELNVPEH DVEQLLVSLI
401: LDNRIQGHID QVNRLLERSD RSKGMKKYTA VDKWNTQLKS LYQTISNRVG
101: LTYIKSAVTR NYSEKCINSI MDYVSGSASQ NFGLLQEFYQ TTLQALEEAK NERLWFKTNL KLCKIFFDIG EYGRMSKILK ELHKSCQRED GTDDHKKGTQ
201: LLEVYAIEIQ MYTEMKNNKK LKQLYQKALT IKSAIPHPRI MGIIHECGGK MHMAERQWAE AATDFFEAFK NYDEAGNHRR IQCLKYLVLA NMLMESEVNP
301: FDGQEAKPYK NDPEILAMTN LIAAYQRNEI LEFEKILKSN RRTIMDDPFI RNYIEDLLKN IRTQVLLKLI KPYTRIRIPF ISKELNVPEH DVEQLLVSLI
401: LDNRIQGHID QVNRLLERSD RSKGMKKYTA VDKWNTQLKS LYQTISNRVG
001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
Arabidopsis Description
CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.