Factsheet for Solyc10g081150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc01g091650.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Solyc01g010820.2.1	AT1G26830.1	12615944
AT2G26990.1	Solyc01g091650.2.1	AT3G61140.1	11854419
AT2G26990.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT2G26990.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT2G26990.1	Solyc04g080160.2.1	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072227	Potato	nucleus	99.09	99.09
KRH64921	Soybean	nucleus	90.2	90.2
Solyc01g008840.2.1	Tomato	cytosol	89.75	89.75
VIT_08s0040g00430.t01	Wine grape	cytosol	89.29	89.09
Solyc11g062430.1.1	Tomato	cytosol	88.84	88.84
TraesCS3D01G194400.1	Wheat	nucleus	88.61	88.61
TraesCS3A01G191800.1	Wheat	golgi, unclear	88.61	88.61
HORVU3Hr1G039980.8	Barley	nucleus	88.61	88.61
Os01t0279200-02	Rice	plasma membrane	88.61	88.61
TraesCS3B01G219800.1	Wheat	cytosol	88.38	88.38
KRH57710	Soybean	nucleus	88.15	88.15
EES02774	Sorghum	cytosol	87.47	87.47
KRG94272	Soybean	nucleus	87.47	87.47
KRG94968	Soybean	cytosol	89.29	87.11
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	86.79	84.67
GSMUA_Achr6P08520_001	Banana	cytosol	35.99	82.72
CDY04472	Canola	cytosol	82.23	82.23
AT2G26990.1	Thale cress	cytosol	82.23	82.23
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	86.79	82.11
CDY38538	Canola	cytosol	82.0	82.0
CDX71478	Canola	cytosol	82.0	82.0
CDX83249	Canola	cytosol	81.55	81.74
Bra000529.1-P	Field mustard	cytosol	81.55	81.55
Bra012038.1-P	Field mustard	nucleus	81.32	41.8
Solyc05g013030.1.1	Tomato	plastid	18.68	19.39

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	GO:GO:0000338	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0045892
InterPro:IPR000717	UniProt:K4D302	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc10g081150.1	EnsemblPlants:Solyc10g081150.1.1
UniParc:UPI000276978C	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:62285047..62292687

Molecular Weight (calculated)

51269.7 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.596

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDEDQE EQDVDIENQY YNSKGMVETD PEGALEGFAE VVRMEPEKAE WGFKALKQTV KIYYRLGRFK QMMDSYREML TYIISAVTRN
101: YSEKCINNIM DFVSGSASQN VGLLREFYET TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGKMNKIMKE LHRSCQKADG TDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYGKALTI KSAIPHPRIM GIIRECGGKM HMAQRQWAEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESQVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEIL EFEKILKSNR KTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SKEINVPEGE VETLLVSLIL DNRIQGHIDQ
401: VNKLLEHCDR SKGMKKYTAI DKWNTQFQSL YQTISNKVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.